RNA id: TU696


Basic Information

Item Value
RNA id TU696
length 2561
RNA type TUCP
GC content 0.23
exon number 2
gene id G474
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 2524525 ~ 2527244 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTAAGATGTCAAGTGCGTTCAAGTCTCTTTACAATTCTgtataaaactgattttttaaaCATGACAGGAAAAACACGCTTTAAGtgtgttttaggtttttattaaatgcatgtaatttcGAATATTACAATAGTGACATATTTTCTGTCGTAGTTGCACAATACAATGGTATTTTATTCATGTGACGTTAAATGACGAGAGATACAAAATGTTAATCATAGTGCTcgaaatgatatatttttctattacgCCAAGAATCATTAGAATATTGgcgttccatgaagatattcgTACTTTTGACGAATTGTTGATTTTCACATAGTTATATTCTTGATGTACCCAAGAAACCCGACATCAATGGAGACACATTTCATTTGATGCATGAACCTCAATTTAAAAAGCGGCCCCtcgtgactggttttgtggtaacGGTTCcgaaagaaaacacaacaatGTCATTGAGGAGTTATTCATCGGGACGTCAGACTCGGCGCACGGGCGTCTTCCGAAGCAGCTCCCGCTTGGCTTTGGGTTTGATAGATTCCTCCATCTGCGGCATGACTTTGGACATGGCGTTGTGGATCCAGGAGATGTATTTGGAGACCTGCGTGTAGACCCCGTACTTGCCCTTGCGTGCGCAGCCCTCGCCCCAGCTGACCACGCCCGTCACGAACCACGTGTTTCTGTAGCGGGTCACGTGCGGCCCGCCGCTGTCTCCCTGACACGCGTCCCTGTCCCCCCCGGGGTATCCGGCACAGAACATGCGGCTGGAGATCTTGAACTTGCTGGACTCGATGCACTTGCCGCGGTCGATGTACGGCATGGCCAGCTTCTTCAGGACGGTGGTCTGCAGGCCTCCCTCGCGGAGCCGGCCGAAGCCGCTGACCAGACCGTCCGGCTGCCGCATCAAAACGTTCTCGGCGAACTTTTGCTCCGGGAGGCAGGCGGGGATGATGAAGCGGCTGAATCTGATGGGCTTGCTGAGCTTGATGAGGGCGATGTCGTTGTGGTAGGTGTCGGACATGTAGTTCTTGTGGACCAGAATCTCGTCCACGTCGTGTGTGACCTCCTGACCCTCGGTCACCAGCGTGTTGTACTCGCCTGAAAGGAACACACAAACAGGACTGAGATACACAACACCTCAACGATCTCACCTGCTGTCCTCTAGAGGTGAGGAAAACCAGTCAGAGATCTCCGTGTTATTTAACAGTTGTGATTATTAATTACGATCATCGCTTCTTAcactgaatgatgtttataccGTTGCTTGATTTTTACAGACCGtattttaaataagataaaaacaactgaaaaaacatACCACTTTGATCACATTTATCAAGCCTGTGAAATATGCTTCGGAttggttttaaataataaaagtaaaatatacacagtattatAATGCTCTACCAAAAgaactcaaattaaaataatgcagaaacCCTTAAGATAACAAGAAAAGAACGCATCTTAAGCACACAGAATAACAatttatatcaataaaaaattatgaaatatgattattaatgcAGCCCTACTCTGTATGAAGTTTATCATCCAGTGATCTAGCTCTAGACTGTTATGAATTAGTTATGAATAGTCACTTATTTGACTCTTATTAATTTTAGTCTGTttgataaattattcttttagcATTATTGCGcaactattatagtttttgttaatattttaatttgtttgtatatCAGAGTTCCTCTTTTTGGttgtcaattttattttagtctttcgtgtttttttccattttagtttCAACTGACTCCTTTTTGTACAGTGttaaattgaatgaaaatgagaagtgttgccatggcagccagctaatatccacctttttctttaATGCAGAAGTAAGCCTAGACTTCCAGTTCATTAGCCCTTACAGATGAATAACGAGACGAAACAAAGAGCACTGTGTGTTCATCAtcaagataatacattaaaataatataagacACACTAGTTTTCAATaccaagcagcaaaacaaactgtTCTGTACAGCTGGACGTCTATCAGACCGGAAGATAGATACCTAAAATAGAATTTACAAAAGGCCACGCCCATTTTAAGCCAAGAAAAAGTGGgttaactaataataatgagaacACCATAAAATATACTAATGTGAAAGAGCAACATCTCAGCAATAACATgctaaaaacagcttttcttcTGGACCAAAttactgaaaatgttaaataaaggaCGAGGACATGTTTTTGTGATGTTCTTACCTACGACCACGCGGATGGAGAGAGACTGATTCATGCAGTGAGCGGCCGACAGAACGAAGTACTCGTTTAGGATGGTGCCGCCCACGATTCTGGAGTCTGAATTGGAGGACTGGGCCAGAATGATGTCCTCCTTCACCGGATTCACCGGCTCCTGCTCCAGGACACTGTCCGAGTCGTTTCCAGGAGCGCTCGTGACGTCCACGACAGGCTCGGCAGTGCTCTCCTCTTCGTTCTCGGTGTGGTTGACGTGTGTGGGGTTTAACAAGCTTCTGGTCTTCTGAGGATGGACGACCCCGCATTTGAAAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU706 lncRNA upstream 9019 2514988 ~ 2515506 (+) False pcid2
TU708 lncRNA upstream 25505 2493572 ~ 2499020 (+) False setdb2
TU709 lncRNA upstream 25505 2493572 ~ 2499020 (+) False setdb2
TU710 lncRNA upstream 25505 2493572 ~ 2499020 (+) True setdb2
TU721 lncRNA upstream 32648 2489483 ~ 2491877 (+) True G485
TU741 lncRNA downstream 11989 2539233 ~ 2540401 (+) False G504
TU742 lncRNA downstream 11989 2539233 ~ 2540401 (+) True G504
TU743 lncRNA downstream 13243 2540487 ~ 2542309 (+) True G505
TU754 lncRNA downstream 52072 2579316 ~ 2583647 (+) True G512
TU759 lncRNA downstream 61201 2588445 ~ 2588673 (+) True G517
XM_043236065.1 mRNA upstream 6140 2511572 ~ 2518385 (+) True pcid2
XM_043246029.1 mRNA upstream 35422 2483640 ~ 2489103 (+) True grtp1a
XM_043238321.1 mRNA upstream 42966 2469473 ~ 2481559 (+) True adprhl1
XM_043238312.1 mRNA upstream 42966 2470319 ~ 2481559 (+) False adprhl1
XM_043238329.1 mRNA upstream 47025 2470483 ~ 2477500 (+) False adprhl1
XM_043248050.1 mRNA downstream 25515 2552759 ~ 2558527 (+) False setdb2
XM_043248058.1 mRNA downstream 25515 2552759 ~ 2558295 (+) False setdb2
XM_043242543.1 mRNA downstream 34113 2561357 ~ 2564419 (+) True creg1
XM_043242553.1 mRNA downstream 37302 2564546 ~ 2573977 (+) False cd247
XM_043242561.1 mRNA downstream 42928 2570172 ~ 2573977 (+) True cd247
TU718 other upstream 10666 2511721 ~ 2513859 (+) False pcid2
TU731 other upstream 38537 2483673 ~ 2485988 (+) False grtp1a
TU616 other upstream 332061 2185859 ~ 2192464 (+) True cyyr1
TU311 other upstream 1082859 1439073 ~ 1441666 (+) True LOC122327253
TU309 other upstream 1083086 1439073 ~ 1441439 (+) False LOC122327253
TU717 other downstream 67687 2594931 ~ 2596302 (+) True G482
XR_006252051.1 other downstream 214835 2742079 ~ 2742212 (+) True LOC122353699
TU1095 other downstream 807414 3334658 ~ 3340876 (+) True G727
TU1118 other downstream 1109463 3636707 ~ 3699093 (+) True G749
TU1197 other downstream 1829454 4356698 ~ 4357260 (+) True G824

Expression Profile