RNA id: TU706


Basic Information

Item Value
RNA id TU706
length 356
lncRNA type sense_over
GC content 0.42
exon number 3
gene id pcid2
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 2511572 ~ 2518385 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGGTGGTTCAATATCCTTTGTGTGTTCTTGTTGTGTGTTCttgttgtgtgtctgtgtgtcggATGAGCGGCCGCTCGGTGTTTGTTCTTAACGCAGCTCAACATCGTTCCTGAAGGCGTTCCAGGCTCATAAAGAGGAGAACTGGGCACTTCCCATCATGTTCGCTGTGACCCTTGACCTCAGGATATTCGCCAATAATGCGGAGCAGCAGCTGCAGTCGAAAGGCAAGGGGAAGATTGGAGACATGCTGGAGAAAGCAGCGGAGCAACTCATGAGCTGCTTTAGAGTGTGTGCCAGTGACAAGTGagtgacacagacacacacacacacacacacacacacagacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU708 lncRNA upstream 15968 2493572 ~ 2499020 (+) False setdb2
TU709 lncRNA upstream 15968 2493572 ~ 2499020 (+) False setdb2
TU710 lncRNA upstream 15968 2493572 ~ 2499020 (+) True setdb2
TU721 lncRNA upstream 23111 2489483 ~ 2491877 (+) True G485
TU681 lncRNA upstream 93341 2420476 ~ 2421647 (+) True G463
TU741 lncRNA downstream 23727 2539233 ~ 2540401 (+) False G504
TU742 lncRNA downstream 23727 2539233 ~ 2540401 (+) True G504
TU743 lncRNA downstream 24981 2540487 ~ 2542309 (+) True G505
TU754 lncRNA downstream 63810 2579316 ~ 2583647 (+) True G512
TU759 lncRNA downstream 72939 2588445 ~ 2588673 (+) True G517
XM_043246029.1 mRNA upstream 25885 2483640 ~ 2489103 (+) True grtp1a
XM_043238321.1 mRNA upstream 33429 2469473 ~ 2481559 (+) True adprhl1
XM_043238312.1 mRNA upstream 33429 2470319 ~ 2481559 (+) False adprhl1
XM_043238329.1 mRNA upstream 37488 2470483 ~ 2477500 (+) False adprhl1
XM_043246780.1 mRNA upstream 108701 2390884 ~ 2406287 (+) False gas6
XM_043248050.1 mRNA downstream 37253 2552759 ~ 2558527 (+) False setdb2
XM_043248058.1 mRNA downstream 37253 2552759 ~ 2558295 (+) False setdb2
XM_043242543.1 mRNA downstream 45851 2561357 ~ 2564419 (+) True creg1
XM_043242553.1 mRNA downstream 49040 2564546 ~ 2573977 (+) False cd247
XM_043242561.1 mRNA downstream 54666 2570172 ~ 2573977 (+) True cd247
TU718 other upstream 1129 2511721 ~ 2513859 (+) False pcid2
TU731 other upstream 29000 2483673 ~ 2485988 (+) False grtp1a
TU616 other upstream 322524 2185859 ~ 2192464 (+) True cyyr1
TU311 other upstream 1073322 1439073 ~ 1441666 (+) True LOC122327253
TU309 other upstream 1073549 1439073 ~ 1441439 (+) False LOC122327253
TU696 other downstream 9019 2524525 ~ 2527244 (+) True G474
TU717 other downstream 79425 2594931 ~ 2596302 (+) True G482
XR_006252051.1 other downstream 226573 2742079 ~ 2742212 (+) True LOC122353699
TU1095 other downstream 819152 3334658 ~ 3340876 (+) True G727
TU1118 other downstream 1121201 3636707 ~ 3699093 (+) True G749

Expression Profile