RNA id: TU717


Basic Information

Item Value
RNA id TU717
length 1044
RNA type TUCP
GC content 0.30
exon number 2
gene id G482
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 2594931 ~ 2596302 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCACCTCGGTGTGTGAGTAAAGCGTCGTCCAGGAACTCTGCACACGAGCGGAAGTGAGGAGAGATGTCAGCGTCTGGGAAGTCGTCCACCTCGATGCCCATGTAGGTGATGTTCATGCCCTGATAAAAGACCTGTCCGGTGTAGACCCCGGTGCCGTGAGCGGCGTTTAACACATGAGTGATGCCCAGCCGCTTCAGACGACCTTTATTCACCGCCACAGACCTGTTCTCTGCGATGTAGAGTCCGGGCCAGACCTCGTCGACGGGGTTGAAGGGCGCCTCCAGACGGTCCTGGGTCAGCGCTCTCTGGATGTCCAGCACACAGGGCGTGTTGTAGGGGCTGCGGTCATCCATCATGTCCTTCACTCTGTTGTAGAGATCCTCCACCATCAGCTGCCTGGCCGACTCCAGCATGCTCTCGGGGGCCGCCGGGGCCCGCAGCTCTCTGGAGCCCAGCTCTGAgaccggacacacacacacacacacacacacacacacacagagactcaaCACTAATCTGTTCACAGCACAGACGCTGAAACTAGTGACTGTGTGCTGCAGAGTTAAACTTCTCTATCCACATCACAGCAAAACAACAgcgttttacaagaaaatgctCTTTCAGGATTTCTACTTTAAAGTTTGTTCTTCAGTTctgtacactcttaaaaataaagctgcttaAAAGCTTCTCCACAGCgtttccacagaagaaatgtttttggttcctcaagaaatttaataatctttaaaagaaGCTTTTTGTGAATGTGCCGTCAGATGCTGAAGGTTCTAtggaaccatttaaacaaaaaacttctTCTGTTGGATCgtgaatctttatttttaagagagtaAATCTCCAGGACCTGCTTCTCAGACCTTCACTGATGATCTTCTTGGCAGCGATGGAGGAGGACAGATGAATCGGCTCCATGAAGATGCTCTCCGCATCCGAGCCGGAGATCATGGAGAAGCGGTCCGACACCGAGGAGAAGCGATCAGACGTCATGGAGAAGCTGtgtgagatcagacacactctcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU760 lncRNA upstream 5923 2588687 ~ 2589008 (+) True G518
TU759 lncRNA upstream 6258 2588445 ~ 2588673 (+) True G517
TU754 lncRNA upstream 11284 2579316 ~ 2583647 (+) True G512
TU711 lncRNA upstream 36405 2493572 ~ 2558526 (+) False setdb2
TU743 lncRNA upstream 52622 2540487 ~ 2542309 (+) True G505
TU722 lncRNA downstream 6889 2603191 ~ 2606077 (+) True G486
TU769 lncRNA downstream 29743 2626045 ~ 2627404 (+) True G527
TU785 lncRNA downstream 107220 2703522 ~ 2720923 (+) True G538
TU796 lncRNA downstream 129998 2726300 ~ 2730720 (+) True G546
TU1087 lncRNA downstream 689647 3285949 ~ 3286202 (+) True G719
XM_043242553.1 mRNA upstream 20954 2564546 ~ 2573977 (+) False cd247
XM_043242561.1 mRNA upstream 20954 2570172 ~ 2573977 (+) True cd247
XM_043242543.1 mRNA upstream 30512 2561357 ~ 2564419 (+) True creg1
XM_043248050.1 mRNA upstream 36404 2552759 ~ 2558527 (+) False setdb2
XM_043248058.1 mRNA upstream 36636 2552759 ~ 2558295 (+) False setdb2
XM_043250987.1 mRNA downstream 51125 2647427 ~ 2654848 (+) True gpa33a
XM_043248288.1 mRNA downstream 59831 2656133 ~ 2676029 (+) True LOC122351317
XM_043248297.1 mRNA downstream 59831 2656133 ~ 2676029 (+) False LOC122351317
XM_043248309.1 mRNA downstream 59831 2656133 ~ 2676029 (+) False LOC122351317
XM_043248316.1 mRNA downstream 59831 2656133 ~ 2676029 (+) False LOC122351317
TU696 other upstream 67687 2524525 ~ 2527244 (+) True G474
TU718 other upstream 81072 2511721 ~ 2513859 (+) False pcid2
TU731 other upstream 108943 2483673 ~ 2485988 (+) False grtp1a
TU616 other upstream 402467 2185859 ~ 2192464 (+) True cyyr1
TU311 other upstream 1153265 1439073 ~ 1441666 (+) True LOC122327253
XR_006252051.1 other downstream 145777 2742079 ~ 2742212 (+) True LOC122353699
TU1095 other downstream 738356 3334658 ~ 3340876 (+) True G727
TU1118 other downstream 1040405 3636707 ~ 3699093 (+) True G749
TU1197 other downstream 1760396 4356698 ~ 4357260 (+) True G824
TU1199 other downstream 1761705 4358007 ~ 4358296 (+) True G826

Expression Profile