RNA id: TU722


Basic Information

Item Value
RNA id TU722
length 2807
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G486
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 2603191 ~ 2606077 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCCaagaataaacatataaaaataaaacagccatTTTGTTGATCATAAAGTGTTTTTCTAATCTTTTTTACAGCACTCTTCATGAATCTGGTACAAAACAGAATCATTTCTAGTGAATGAAGGTGCAGAAACACGATTGTGACTTTCTTCGTTATTCGTGAATTAAAACCCTGATTCAGTTTGTGTTCCAGAGACGAACATTAATCAAACAGCACAATGAAACCAAACTCATCACGAGCACATTTACAAACGACACATAAAGTACTGTGACGAGGTTCAGGAGATCCTGTGGTTTAATACAACATCCATGAAGAGAGCGAACGTTTGACTTCACTCCAGTGAGATTGGGTCTTGTGTttcaccatcatcatcctcatcatcctcatcatcctcatcacaACCGTACATTCATCACATCATCACTCGTTTAACGAGCAAACCAGACGTTAGTCTTACAGCGCTTCTCCCCCGAAGGCTCCGACCGCTCCACATTCAGCACACTCTTCTCGTCGTGTGTCTTTGGTGTGCATATTTGTGTATTCATGGCTTGCAGATGCTTCACGAAATCCCTAAGAATTACATCTAGACGTGCGACAGAAGGGTTATTACCCATCAGACACTGGGCGAGGATCACAGTGAAGTGGGCAGATGGCAGAATCTGCAGtctattattcaaaaatattccTGCATCATCTGATTTTTAAGGTCTGAGTGTGTTTTAGTTCCAGTCAAAAGGACCAGCGGCTCCATAACAGCCCTGTGCTCGCTAATGAAGCTTGAGTTCAGCTGttcgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagtgtgtgcgtgagtgtgtgtgtgtgtgtgagagtgtgtgcgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgagagtgtgtgtgtgtgtgtgagagtgtgtgtgtgtgagagagtgtgtgtgtgtgtgtgtgtgtgtgtgagagagtgtgtgtgtgtgagagagtgtgtgtgtgtgagtgtgtgtgagagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgaggtgtgtgtgtgtgtgtgttacagtgcAGTCTGTGTGGTTTCATCTGAAGTATTGACGAAGCTGTTTTCTGTATTCCTGTGTGTTATCTGATGGGACTCAGGTCATGTGTTCATGTAGGTCTTACACTTGCTTTGTTTGAGATCAAAACTGACCGGAGGCCATAatcatgtaataatttaaatttcgtgaaataaatatactatatttaatttcacaaaaatatctcATTCAACTGtatttcatgttatttaatattagtatCGTAATTATGGACtattttctgtatataaaaaaactaaatgataatTAGTTTCAGTTAATGCAGTATTCAAGTTAAAATTAGaacaaaagcattaaatgtGTAGCCATATAGGACTGAGCAATATATCACGATATATTCATCCACAAAACTGAACGTGATAATGTGTAGCTCATCAGTGAACCGGCTTCATAACtgacctatatatatatgtatatatatatacacactttcattcattaaaagcaTGACCGTTCTGACATCATCTGCACTCTGTATGTAGATTTCTGGGTAACTACTAAGAGTGTAACAGTAAGAAGTGTGTAACAGTAAAAGATGTTGTTATGGGTGTCTTGGTTTAGTATGCATGCACACTGAACAGAAACAGCGCCATTTTAAGCACTGCACAAGTTTCTgaacttcattaaaaaactTCCAGTTGTATGCCCTTTCCCTTTCCCTGCTAGTTTTTAACAtgtaataaacatgaatgaacttCTCATGCCTCATGCAATCACTCAGTCAGTGTTTCAATCACAGCAAGATaccacaaaaaaatatcatCTGGCATTTTAGGCAGTGAATGCACTCTTTTTGAACCAAAACACCAGGCAAAAGAATCCAGCACagactgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagattgtaCGTCGCTTGTGCGTTAGCTCCAAGTTTGCGCTCAGTTCGTGTCTGAGTGAGGTAGCAGCGGCAGGGCAGCTTCGCTGGGGTCCGAGTCGCCGGAGCTCAGCAGCGCCTCCATCTGTTTCTCCAGCAGCGCCACCAGCTGGCTGCTCTTGTCTGCGCAGTCGTCAGTGAACTGGAGGTAGGGTGTGTTCTTCAGAGCGTCGGGCAGACAGGGCACCAGGTGCAGCGCTCCGCCGGGCGTCACGCCCTTCACGCAGGTGTAGAAGTCCTGCGGCGGCACCAGGGCGGGGCTTATTATCATGCTGTAGTCTGTGCCTGGGACGCACATGAGCTCAGAATGGGCGGGGCCAGGGTTCAAACTGGGTGGGGCTCCCTCACAACAAGGGGTGGGGCCGTGGTTTGGAGGAGGCAGGGCTCCCTCACAATAGTGGGTGGGGTCAGAATTGGAAAGAGGCATGGGTGCCTCGCAGTAGGGGGTGGGGCCATGGCAGTATGGCGCAGGACTGCAGCTCTGAGGCGCAGGCGGTTGTCTGTCTGCGATCAGTGCATCCTCACGTTTATACGGAGTCGCAGCCGGACACGGGTCCACGCTCAAATGGTACCACGTCTCCATGCTGTACTGCGGCGACTTATAACCGTGAAAGCTGGAGAAATGGCGATTGATCTCGTCAATCTTCCC

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
ko04530 Tight junction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU760 lncRNA upstream 14183 2588687 ~ 2589008 (+) True G518
TU759 lncRNA upstream 14518 2588445 ~ 2588673 (+) True G517
TU754 lncRNA upstream 19544 2579316 ~ 2583647 (+) True G512
TU743 lncRNA upstream 60882 2540487 ~ 2542309 (+) True G505
TU741 lncRNA upstream 62790 2539233 ~ 2540401 (+) False G504
TU769 lncRNA downstream 19968 2626045 ~ 2627404 (+) True G527
TU785 lncRNA downstream 97445 2703522 ~ 2720923 (+) True G538
TU796 lncRNA downstream 120223 2726300 ~ 2730720 (+) True G546
TU1087 lncRNA downstream 679872 3285949 ~ 3286202 (+) True G719
TU1141 lncRNA downstream 1114187 3720264 ~ 3720539 (+) True G771
XM_043242553.1 mRNA upstream 29214 2564546 ~ 2573977 (+) False cd247
XM_043242561.1 mRNA upstream 29214 2570172 ~ 2573977 (+) True cd247
XM_043242543.1 mRNA upstream 38772 2561357 ~ 2564419 (+) True creg1
XM_043248050.1 mRNA upstream 44664 2552759 ~ 2558527 (+) False setdb2
XM_043250987.1 mRNA downstream 41350 2647427 ~ 2654848 (+) True gpa33a
XM_043248288.1 mRNA downstream 50056 2656133 ~ 2676029 (+) True LOC122351317
XM_043248297.1 mRNA downstream 50056 2656133 ~ 2676029 (+) False LOC122351317
XM_043248309.1 mRNA downstream 50056 2656133 ~ 2676029 (+) False LOC122351317
XM_043248316.1 mRNA downstream 50056 2656133 ~ 2676029 (+) False LOC122351317
TU717 other upstream 6889 2594931 ~ 2596302 (+) True G482
TU696 other upstream 75947 2524525 ~ 2527244 (+) True G474
TU718 other upstream 89332 2511721 ~ 2513859 (+) False pcid2
TU731 other upstream 117203 2483673 ~ 2485988 (+) False grtp1a
TU616 other upstream 410727 2185859 ~ 2192464 (+) True cyyr1
XR_006252051.1 other downstream 136002 2742079 ~ 2742212 (+) True LOC122353699
TU1095 other downstream 728581 3334658 ~ 3340876 (+) True G727
TU1118 other downstream 1030630 3636707 ~ 3699093 (+) True G749
TU1197 other downstream 1750621 4356698 ~ 4357260 (+) True G824
TU1199 other downstream 1751930 4358007 ~ 4358296 (+) True G826

Expression Profile