RNA id: TU731


Basic Information

Item Value
RNA id TU731
length 837
RNA type TUCP
GC content 0.32
exon number 4
gene id grtp1a
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 2483640 ~ 2489103 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTGATGGACGTGTGCCCTTGAGCTCTCTGGAGAAATTAATCGCAAAGTGTTCGCTATGGATGACGCGTCCAAACGCGCGCTCGAAGCAGAAGTCGGCGCGGTGTCGGTGTGATCCCCGGATTATCGCCGTCCCGCGCGAGAACGGAGCGTCGCGGGCCGTCGCCGAGGCGGCGTGGGAAAAGTTTCTCTTACGTGACGCGCGGGAGAAAGGCGTCTGggtcgcgtcgcgtcgcgtccATGCGGCACCGCGGAGCGTCCGTGATTGTGAATGGAGTCGCGGAGCTCTGAGGTCTGATCATGGAGCAACGCAACGGGACGCGACGCTCCGATCCGCCGCAGCTGCGCATCAACGCGCCGAGcagcgcgagagagagagcggccAGTGTGGATCCGTACGGCTTCGAGCGCTCCGATGATTTCGACTACGAGTCCTACGAGGAGCTGATGTCCGAGTACCTGGCCGTTCTCACCAGACGCTCCATCAAGTGGTCCAAACTTCTGCAGGGCAAGCGGCGAGTGGACCGCAACCTGAAGGtgaagCGGTACGTACGGAAGGGCGTCCCGAACGAGCACCGTCCTCTGGTGTGGATGACGGCGAGCGGAGCGCAGGAGCGTCTGGAGAAGAACCCCGGTTACTATCGGTCTCTGCTGGACGCTCAACATGACCCCCGACTAGTGGAGACCATCCGCACCGATCTGCACAGAACTTTCCCGGATAACGTTTACTTCCGTAAGTCTGCAGATCCGTGTCTGCAGAAGGAGCTGTTCAACGTGCTGCTGGCGTACGGACAGCACAATAAAACAGTGGGGTACTGTCAGGTACGTGATCACGCTCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU681 lncRNA upstream 62026 2420476 ~ 2421647 (+) True G463
TU641 lncRNA upstream 110517 2372715 ~ 2373156 (+) True G440
TU668 lncRNA upstream 156343 2323285 ~ 2327330 (+) True G457
TU640 lncRNA upstream 207402 2275992 ~ 2276271 (+) True G439
TU654 lncRNA upstream 208332 2275007 ~ 2275341 (+) True G450
TU721 lncRNA downstream 3495 2489483 ~ 2491877 (+) True G485
TU708 lncRNA downstream 7584 2493572 ~ 2499020 (+) False setdb2
TU709 lncRNA downstream 7584 2493572 ~ 2499020 (+) False setdb2
TU710 lncRNA downstream 7584 2493572 ~ 2499020 (+) True setdb2
TU711 lncRNA downstream 7584 2493572 ~ 2558526 (+) False setdb2
XM_043238321.1 mRNA upstream 2114 2469473 ~ 2481559 (+) True adprhl1
XM_043238312.1 mRNA upstream 2114 2470319 ~ 2481559 (+) False adprhl1
XM_043238329.1 mRNA upstream 6173 2470483 ~ 2477500 (+) False adprhl1
XM_043246771.1 mRNA upstream 77386 2390877 ~ 2406287 (+) True gas6
XM_043246780.1 mRNA upstream 77386 2390884 ~ 2406287 (+) False gas6
XM_043236065.1 mRNA downstream 25584 2511572 ~ 2518385 (+) True pcid2
XM_043248050.1 mRNA downstream 66771 2552759 ~ 2558527 (+) False setdb2
XM_043248058.1 mRNA downstream 66771 2552759 ~ 2558295 (+) False setdb2
XM_043242543.1 mRNA downstream 75369 2561357 ~ 2564419 (+) True creg1
XM_043242553.1 mRNA downstream 78558 2564546 ~ 2573977 (+) False cd247
TU616 other upstream 291209 2185859 ~ 2192464 (+) True cyyr1
TU311 other upstream 1042007 1439073 ~ 1441666 (+) True LOC122327253
TU309 other upstream 1042234 1439073 ~ 1441439 (+) False LOC122327253
TU310 other upstream 1042234 1439073 ~ 1441439 (+) False LOC122327253
TU190 other upstream 1362952 1119719 ~ 1120721 (+) True G136
TU718 other downstream 25733 2511721 ~ 2513859 (+) False pcid2
TU696 other downstream 38537 2524525 ~ 2527244 (+) True G474
TU717 other downstream 108943 2594931 ~ 2596302 (+) True G482
XR_006252051.1 other downstream 256091 2742079 ~ 2742212 (+) True LOC122353699
TU1095 other downstream 848670 3334658 ~ 3340876 (+) True G727

Expression Profile