RNA id: TU741


Basic Information

Item Value
RNA id TU741
length 1032
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G504
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 2539233 ~ 2540401 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTCACAGTTGCGTCCGCTGAAGCCCGGCGAACACAGACAGGTGTAGGATTCTGAGTTCTGGGTCGTGCAGAGTCCTTCATTCTCACACGGATTGGATTCACAGTGATCTTTAACTGCAGACGAACACAAATATTCATCTGAACCCTAGACAATGTCATGAGGATGAATGGCTTTCCAAAAACAACGTTAAAGTCTCACCATCGTAGATCTTCCAGAACTCATTCTGTTTGGAGACATTAGTTAGACTTTTGCTTGCATTGAACCgataaaagacaaaactaaagcGAAGACTTGAGCAAGTTTACATAACACCCAAACATTGGGAAATAGTTTTTTAgacatgcaaaaacaacatgtttgttctgttttctagtctaaatatctacaaattctggaattaagatgcatttccttgagaagtaaaaaaaagtaaagggactgtattttattttcaaaaaaatgccagtggggtaagatatgtataaaaaaataagatatttgaCCATCATAAACTTCTAATTCTATTAACCCTAAACCTTCCCTAACAGTCAACATGTCgctgcaaattaatgagaatttatTGACCTTTATTTACTGATACTGATAGCTAGtataatgtctaaagtggactatcagaATGAAGTGTAACCAAAAACAAGATATGAATACTAATGAAGAAACTGATTTCTGCAGCGTAGTTCATGTCAAGCCCAGTACAGAGGCATCGGTCACTGAACGTGTGTCATACTGACGGTGGCCTCGGTGTGTTCAAACACCTCCCGCGCCTCCTCATACGAACACTTCTCCTCCAGACACTCTCTCTCCAGATTGCCCATCTTCAGCTCCTCAAACCAGCCTGAGTTTGCCCGCTTGGTCCGGATCAAAACCCCGTGGGCCTCGTCCTTCCCCACAAACactgaaccacacacacCTGTAGCAGAATGACAGCAGTAAAGACCCAAGAGGACGTAAAGCCCTGACAGGAGACTCATGTTGAGCAGCGCTTCTGTTCGTATCTTATGCTGCAGGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU706 lncRNA upstream 23727 2514988 ~ 2515506 (+) False pcid2
TU708 lncRNA upstream 40213 2493572 ~ 2499020 (+) False setdb2
TU709 lncRNA upstream 40213 2493572 ~ 2499020 (+) False setdb2
TU710 lncRNA upstream 40213 2493572 ~ 2499020 (+) True setdb2
TU721 lncRNA upstream 47356 2489483 ~ 2491877 (+) True G485
TU743 lncRNA downstream 86 2540487 ~ 2542309 (+) True G505
TU754 lncRNA downstream 38915 2579316 ~ 2583647 (+) True G512
TU759 lncRNA downstream 48044 2588445 ~ 2588673 (+) True G517
TU760 lncRNA downstream 48286 2588687 ~ 2589008 (+) True G518
TU722 lncRNA downstream 62790 2603191 ~ 2606077 (+) True G486
XM_043236065.1 mRNA upstream 20848 2511572 ~ 2518385 (+) True pcid2
XM_043246029.1 mRNA upstream 50130 2483640 ~ 2489103 (+) True grtp1a
XM_043238321.1 mRNA upstream 57674 2469473 ~ 2481559 (+) True adprhl1
XM_043238312.1 mRNA upstream 57674 2470319 ~ 2481559 (+) False adprhl1
XM_043238329.1 mRNA upstream 61733 2470483 ~ 2477500 (+) False adprhl1
XM_043248050.1 mRNA downstream 12358 2552759 ~ 2558527 (+) False setdb2
XM_043248058.1 mRNA downstream 12358 2552759 ~ 2558295 (+) False setdb2
XM_043242543.1 mRNA downstream 20956 2561357 ~ 2564419 (+) True creg1
XM_043242553.1 mRNA downstream 24145 2564546 ~ 2573977 (+) False cd247
XM_043242561.1 mRNA downstream 29771 2570172 ~ 2573977 (+) True cd247
TU696 other upstream 11989 2524525 ~ 2527244 (+) True G474
TU718 other upstream 25374 2511721 ~ 2513859 (+) False pcid2
TU731 other upstream 53245 2483673 ~ 2485988 (+) False grtp1a
TU616 other upstream 346769 2185859 ~ 2192464 (+) True cyyr1
TU311 other upstream 1097567 1439073 ~ 1441666 (+) True LOC122327253
TU717 other downstream 54530 2594931 ~ 2596302 (+) True G482
XR_006252051.1 other downstream 201678 2742079 ~ 2742212 (+) True LOC122353699
TU1095 other downstream 794257 3334658 ~ 3340876 (+) True G727
TU1118 other downstream 1096306 3636707 ~ 3699093 (+) True G749
TU1197 other downstream 1816297 4356698 ~ 4357260 (+) True G824

Expression Profile