RNA id: TU785


Basic Information

Item Value
RNA id TU785
length 293
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G538
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 2703522 ~ 2720923 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttttttttttttttttttttttttttttTtagaaaaatagattttattaaagTCAGTCAAAAGACAATGGAAacgaaaaaaagcaaaagccaAAAGCAAAGTGAATAAAGACAAGTGAAGACAGCAGAAGCCGGTGATCAATGATTTGAGCAGCGAAGGTCAGGAGAGGATCAGCGCAGACGATCCCAGCGCCAGATCGAAGCGTCATCACACACCGCGATCAGAATACTGCTGTCTCGACTGAAGCTGGTCTGTCTGATCGCAGACGTGCATTTGGGCAGCGTGAGCGTCGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU769 lncRNA upstream 76118 2626045 ~ 2627404 (+) True G527
TU722 lncRNA upstream 97445 2603191 ~ 2606077 (+) True G486
TU760 lncRNA upstream 114514 2588687 ~ 2589008 (+) True G518
TU759 lncRNA upstream 114849 2588445 ~ 2588673 (+) True G517
TU754 lncRNA upstream 119875 2579316 ~ 2583647 (+) True G512
TU796 lncRNA downstream 5377 2726300 ~ 2730720 (+) True G546
TU1087 lncRNA downstream 565026 3285949 ~ 3286202 (+) True G719
TU1141 lncRNA downstream 999341 3720264 ~ 3720539 (+) True G771
XR_006250463.1 lncRNA downstream 1299174 4020097 ~ 4024338 (+) True LOC122341420
XR_006251095.1 lncRNA downstream 1488486 4209409 ~ 4218600 (+) True LOC122346127
XM_043240364.1 mRNA upstream 3298 2691742 ~ 2700224 (+) True tmem39a
XM_043240370.1 mRNA upstream 3298 2691746 ~ 2700224 (+) False tmem39a
XM_043249376.1 mRNA upstream 12757 2678298 ~ 2690765 (+) True ildr1a
XM_043248288.1 mRNA upstream 27493 2656133 ~ 2676029 (+) True LOC122351317
XM_043248297.1 mRNA upstream 27493 2656133 ~ 2676029 (+) False LOC122351317
XM_043235163.1 mRNA downstream 18754 2739677 ~ 2742411 (+) True rpl24
XM_043224891.1 mRNA downstream 37160 2758083 ~ 2782184 (+) True LOC122328837
XM_043246568.1 mRNA downstream 220847 2941770 ~ 3120820 (+) True LOC122350229
XM_043246576.1 mRNA downstream 220847 2941770 ~ 3120820 (+) False LOC122350229
XM_043251222.1 mRNA downstream 1083676 3804599 ~ 3817996 (+) True slitrk6
TU717 other upstream 107220 2594931 ~ 2596302 (+) True G482
TU696 other upstream 176278 2524525 ~ 2527244 (+) True G474
TU718 other upstream 189663 2511721 ~ 2513859 (+) False pcid2
TU731 other upstream 217534 2483673 ~ 2485988 (+) False grtp1a
TU616 other upstream 511058 2185859 ~ 2192464 (+) True cyyr1
XR_006252051.1 other downstream 21156 2742079 ~ 2742212 (+) True LOC122353699
TU1095 other downstream 613735 3334658 ~ 3340876 (+) True G727
TU1118 other downstream 915784 3636707 ~ 3699093 (+) True G749
TU1197 other downstream 1635775 4356698 ~ 4357260 (+) True G824
TU1199 other downstream 1637084 4358007 ~ 4358296 (+) True G826

Expression Profile