RNA id: TU796


Basic Information

Item Value
RNA id TU796
length 4323
lncRNA type inter_gene
GC content 0.64
exon number 2
gene id G546
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 2726300 ~ 2730720 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGAACaaggaatttttatttaaaactgaattacaGCTAAACTCACAGAATATCATGTGACCTGTAAAAAATCCAAACAATGACCCACTCcctatgtataataaaaaataatgctgaataaaaagagaaagaataacaatatacaCGAATCCCACCACCACAAAACATCAGCAATATCATGTAATATGAGCTTTATAATGTACATCTTTTTCTGAAAGCAGCAGTTACAACAAACAGAGTAATCAGTTATCCAGAATAATAGAGGACTTCTTGGGAATGGCATGGCCtcataaaaagttaattatcaATGGAAGAAAGTCCCAAAAtaacacactgaaacacaccTGAAGTCAACAATCAGGGCGTTCTGGTTCAACAGGCTTGAAGTTACTGATCATCATCTCATGTTTAACCTTCTGACAAAACACACATcagagtaataataataataataataataataataataacaaaggtATACAGATATAGTTACATTGAGATTATAGTTTACAACCCTTTACACACCATAGCCAAATGCAATGCTTCAGATCTGCCTATGAACAAGAGAAGAACATTCACTTTCTTCCTCTTTAACGAAGTGTCCACATTTATTATGACTTTCTGAATAATCCTTCCTATCTTCCTCATATCACTGGATTATTCCTCTTCTGACGTCCAGAAGTTTCTCTGAAGTGTTGCTCTCACTTTCCCTTGCCGTCTACTACTCAGTAGTGAACAATGATAAGACTGTTTCATGGAAACAACCGACATCTGCCTGTGAGAGCAAATGAATCTGTACAGACCGGCTGCCTGACTGACAGCGATTCTGGAGAAGAGCTCGCTCACGAGCGGCTCTGAGCTCCTTTACCTTTCAGGATACGACGCACCTGTGaagagcagagaaaaaaaaaagagattcgGTCTGAGCTTTTAATTGGATTGTAAGGGAATCTGAACTGTGCTGGTCGTCACCTAATCAGTTCCTGAAGTAGAAGAATATTACGTGTACTTTTCAAAACAGCGGGGAAAGTCTATATTCACTTAGCGTGCTTATTTATCGTTCTCTGACCTGGTCCCCCAGGGGCCCGTCGGGCACCAGCTGGGCTGGCTGCTCGTTCTCCAGGTTCTTGGCTCCGGGGTCAGCTCCTCGTCTCAGCAGCAGTCTGACTGCATCCATCTGAGCCGGACGACCCTGTAGAGCACTGGCCATGTGCAGCGCCGTGTTCCCGCTGAACGCCTGGGGCACAGAGCAGAGGtcaggggtcaggggtcagagCAGCGCTGACCGGCGCAGCAGAGCACTGCACACTCACCTTGACGTTTATGACCGAGAAGTAGTTGGACTGGTCCAGAAAGAGGCGCAGCAGCTCGACATTAGCCTCTTCAGCAGCCATATGCAGAGCGGTGCGTCCACTTTTACAGTCCTGTCAGAAACACGAGTCACAACAGCACCAGCAGCGTTTTGCTGATTTTCACTGAAATTTTATGGCCACACAATATTTCACTGTATAAATATCTGAACAtgcaatacataaaaataaagatcaGAGCCTCTACTttcaaacaaaaactatttattccAGCTTCAAGCATTGTTTTATTATCAACACCTTAATGTGGTTAGGTTTCATAAAGaacatgaaaacattaaaatgaatgggtGTGTCAATCAAAAATTTCACAAAGCATAGTGTTAAAGGGAACCCTGGATATTAAGACCTGTATGgcttaatataatgtaattgatGTCCTTTAGTGAAATATGTAGAAGAAAACCCATACATATTTTGGACTGTGTGGGTAAAATGGTGATCTAGACAactcaaaaaacacaacaagaaaTACTGATTTGATGACCACAGCTAATGAACGAGCTTACAGGAGGCGATGGATATAAGCATAACCTTAAActattcactttattttaagctatAAATGTCTTAACATCCAGGGATCCCCTGAAAtgccaaaacttttttaaatctgtgaGACTTTAGGAGCAGTGAAGAAGACTCTTCTATTCTACAAATACCATTAAAACCATTATTTGGGAcatgttccattaagatttagtgtttttaacaaGCCACCAGGGTCCATTAAAGTTTACATTAAATCCAACACAAGTCCCATTATAACCAGAAAAGCACCACTAACCTTGGCTTCCATCGAGGCTCCCATCAGCAGAAGAGTGCTCACACATTCAGCGAGCATCTTTCTCTTCTGTAGCAGAGCTGGACTGTGAGTGGATGGAGGGCCGAGGCTCAGCTCCTGCAGCACGGCATTGTGGGATAACACGGCCACGTGAAGAGGCGTAAGTCCTGCCAACACAAAACACTCTGCATCCTTTACGGCCCTCCAGCATCAGCTATGTAGCAGTTCATCACATCTAATAACCAGTAGGGCTGTCCAGTAAACATATGAATTTAGAATATTTGtccaatttataataaaaatacacattaaagtGCAAAAACGTTGCATCAGAATTTTAGGTGTGCATCAGGTGGCCTTATCAGACGTCTACAATTTTATGATGATAGTGATTTTTTGATTTAgtgcattttaatgcttttgataCAGCGCGGAGAAGATTTTATGGCAAACAGAAGCTGTTCTCACGTAACGCTTATTTATCTATCACCGTTACACTCACGCCTCACACAAGAGATCCACATATTCAGAAAGCATGTAAAATTAAGttctttttacataaaaacatacttatttttaagtgttattgtATTGCTTTGAGGAATTGTGTATTTATAGTCAAACCTAGACCCCAAACAGAAATTATGCtatttaaatttgcatatatttaacatattcataacatttaagtaaaaaagaCACTGACCGTCGTAGTTGACCACCTCCACATTGACCGGCCGTCCGCTCGTCTGGACAGATCTCTGGATGGCCTGAGGAGAAACCGTGAGTTTGCTATTTACACAATTCCCAAAAAGTGAAAACAGATCTCAACATGCACTGCCCTAATGGCATTCTGGGAGAAGCCGATGATTGCGTGCCACGACCTGTCGGTCGTTAATGCCTGAGAGAAACACAGGTATGTTGTTTTGCAGTCTTATCAATAGAGCTGTGTagtgaggccaggccagggaattttctctctgtgttGCGTGCCTCTATTTTGAGGAAATGCATATTAGTTAGGCATGTTATGAGGAAGTCAGTTAGAGTCTGGTTAAATAAACACCGATGAGGACTGTTGATAGaatatgagtaaataataaGAGGAAAAACAGCGGCTAACAGATGGCGACACAGGTTAATATGGAAATACTGCATTGTTGATGACTGTAGGGACAGGTCAGGCTGGTCAACTAGTCACTCAGCAACTGGTCAGGTACTGGTTGTGTACTTAAATTAAAGTGCAAttatcaattaaaatgtttgtgagCTTAATGTGTGCGCTTTGTACCGGTTATCATATTGAACAGAggtttattcttttatttgtattagcTGAGATCTTATGTTCTGATTCTTTAAGGTGTTTGTCTTGACTGGACAGAAGActgcttaaaaatacaaaaacaaacgcATCAAGCTGTTGATTTTTATGAATGGAATATTTAGCACACACAGTATGTCTAATCAAGCTGCTGTGAACGTTTGAGGAgagttaaatataataatctagtGTTATGTGAAAGAGCAGAGCGGAGCTGGCCTTCAGCGTTGAGCAGATACCTGCAGCGTGGAGAAGTGGCCCTTCTCTGCGCAGATGTGGAGCGGGGCCCGGCCCCAGCAGTCCCGGGTGTTAAGCTCGGCTCCCAGCAGAAGCAGGTCTTGAGCGATCAGGTGCTGATCAGCAGCGACGCTCACCTGGAAGGCGCTCTGAAGAGAACATGCCGATGGCAGACATTTTTCTGGCGAGGACATACGCCAGAGCTCTTCTGCCCTGAGCCACAGCAATGTGCAAGAACCTGTAATCAGTCGGCAATCAGCTAACGACTCGAGCCCAGGTTCCTTTGAAGACATGTGAACCAACAGAACAGAGGAGCACTCACGTGTCTCCGTCTCCGTCTCGAGCGGTCAGGTCCACAGGGCTCAGAGCGGACAGCTTCTCCTCCTCCTGTTGGATCTGCCACTGGAAGAAGGACACCGGAGGCGCAGCGGTCAGGCCGAGGCTGGACGAGGATGGGTATGTGTTCAGAAGGCCGCTGTGAAAGGGGCTTTGGGCATCAGCACACAGATCCTGAGGAAAGCCTCTCACCGTCACAGACTCGAAGGACAGAACGTCCCTGATGTCCTCCAGCATCTCAGCGTCACTGAACACATTCTCGCTGCACAGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU785 lncRNA upstream 5377 2703522 ~ 2720923 (+) True G538
TU769 lncRNA upstream 98896 2626045 ~ 2627404 (+) True G527
TU722 lncRNA upstream 120223 2603191 ~ 2606077 (+) True G486
TU760 lncRNA upstream 137292 2588687 ~ 2589008 (+) True G518
TU759 lncRNA upstream 137627 2588445 ~ 2588673 (+) True G517
TU1087 lncRNA downstream 555229 3285949 ~ 3286202 (+) True G719
TU1141 lncRNA downstream 989544 3720264 ~ 3720539 (+) True G771
XR_006250463.1 lncRNA downstream 1289377 4020097 ~ 4024338 (+) True LOC122341420
XR_006251095.1 lncRNA downstream 1478689 4209409 ~ 4218600 (+) True LOC122346127
XR_006251103.1 lncRNA downstream 1488522 4219242 ~ 4221288 (+) True LOC122346159
XM_043240364.1 mRNA upstream 26076 2691742 ~ 2700224 (+) True tmem39a
XM_043240370.1 mRNA upstream 26076 2691746 ~ 2700224 (+) False tmem39a
XM_043249376.1 mRNA upstream 35535 2678298 ~ 2690765 (+) True ildr1a
XM_043248316.1 mRNA upstream 50271 2656133 ~ 2676029 (+) False LOC122351317
XM_043235163.1 mRNA downstream 8957 2739677 ~ 2742411 (+) True rpl24
XM_043224891.1 mRNA downstream 27363 2758083 ~ 2782184 (+) True LOC122328837
XM_043246568.1 mRNA downstream 211050 2941770 ~ 3120820 (+) True LOC122350229
XM_043246576.1 mRNA downstream 211050 2941770 ~ 3120820 (+) False LOC122350229
XM_043251222.1 mRNA downstream 1073879 3804599 ~ 3817996 (+) True slitrk6
TU717 other upstream 129998 2594931 ~ 2596302 (+) True G482
TU696 other upstream 199056 2524525 ~ 2527244 (+) True G474
TU718 other upstream 212441 2511721 ~ 2513859 (+) False pcid2
TU731 other upstream 240312 2483673 ~ 2485988 (+) False grtp1a
TU616 other upstream 533836 2185859 ~ 2192464 (+) True cyyr1
XR_006252051.1 other downstream 11359 2742079 ~ 2742212 (+) True LOC122353699
TU1095 other downstream 603938 3334658 ~ 3340876 (+) True G727
TU1118 other downstream 905987 3636707 ~ 3699093 (+) True G749
TU1197 other downstream 1625978 4356698 ~ 4357260 (+) True G824
TU1199 other downstream 1627287 4358007 ~ 4358296 (+) True G826

Expression Profile