RNA id: TU86


Basic Information

Item Value
RNA id TU86
length 554
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G56
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 393299 ~ 393852 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAACACCACCACCAGGATATCATAACAGCTAGCCTTCTCATACAGGGcctaaaacacacatgcaagaAACAGTCAATAAATACCTCAATTATACTAGAACTGGATTGAGAGAATTTTCCAGTAATCACAATATAgcgataaaatataataaagatatgaaaagaacaaaaaaaaagacttaaccACAAGACTATTACAAAAGATGTAAATAAACAGTCAcaagaaaagaacaaatgaaaacatgtaaTAACTAAACAACGAAACTCAAATTAAGTAGGTCGCACTGGACACTAGCAGGAAGCCGATCACTGAATGGGAGCCGGTCAACGCTCGCCAAACGCGCACAGTGATGAACCGACCATCTCTATTTCCATAGCCTTATGTTTCAGCATTAAACCAGGAACAGAGgaaaagcagcaaaacagcagcaCAGTCTTAATCTGTAGGCTGCAATCGAAGCATCTCCACGGAATATCCTGCTAAAATTTAACAATTCGTTAACCAAATTAAcaaatgtaatacataaaaatacactaatACATACCCAAATCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU81 lncRNA downstream 171971 218929 ~ 221328 (-) True G51
TU80 lncRNA downstream 172225 218579 ~ 221074 (-) True G50
TU46 lncRNA downstream 215098 177676 ~ 178201 (-) True G19
TU45 lncRNA downstream 226972 166097 ~ 166327 (-) True G18
TU20 lncRNA downstream 340711 52167 ~ 52588 (-) True G6
TU104 lncRNA upstream 28280 422132 ~ 422409 (-) True G66
TU108 lncRNA upstream 48027 441879 ~ 442209 (-) True G70
TU110 lncRNA upstream 53656 447508 ~ 447882 (-) True G72
TU111 lncRNA upstream 54476 448328 ~ 448640 (-) True G73
TU141 lncRNA upstream 329893 723745 ~ 724036 (-) True G99
XM_043247627.1 mRNA downstream 31696 210723 ~ 361603 (-) True gli3
XM_043238439.1 mRNA downstream 187740 193211 ~ 205559 (-) True prpf4bb
XM_043241388.1 mRNA upstream 10830 404682 ~ 408086 (-) True ccr9b
XM_043249769.1 mRNA upstream 29048 422900 ~ 433678 (-) False lztfl1
XM_043249768.1 mRNA upstream 29048 422900 ~ 433678 (-) True lztfl1
XM_043235838.1 mRNA upstream 344285 738137 ~ 745984 (-) True LOC122342053
XM_043235840.1 mRNA upstream 372374 766226 ~ 826226 (-) True LOC122342059
TU47 other downstream 206214 186420 ~ 187085 (-) True G20
TU105 other upstream 41956 435808 ~ 436125 (-) True G67
unassigned_transcript_1 other upstream 45202 439054 ~ 439128 (-) True trnag-gcc
XR_006252043.1 other upstream 233848 627700 ~ 627818 (-) True LOC122353666
XR_006252053.1 other upstream 735647 1129499 ~ 1129637 (-) True LOC122353706
XR_006250784.1 other upstream 1200906 1594758 ~ 1604984 (-) False LOC122343438

Expression Profile