RNA id: TU997


Basic Information

Item Value
RNA id TU997
length 506
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G653
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 2561355 ~ 2561966 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATGTTCGGTAGGGTGTTGTCTTCTGAGTGGATTACTGGTCTTCACCTGCAGGTCCTGCACCGAGATCTCCAGGTGAGTCAGATACAGGTACGGGGTTCCGGTTCCGTTGCCGGCGGGCCCGTCGCTGATGGAGAAGGCGTTGGAGAAGGGCTGTCCTAGGACCGGGTCGTGAGTGGAGATCGTGGCCATCGAAGCCCAGTCGCACTTATTGACCACGAACCGGGCCATCCGGGCCACCTCCTCGTGCGGCGGAACCGACAGAGAGCCACCGACAGCGGCGACGAGCGCGACACACACCGCGAGCAGCGAGCGACTCTtcatcagcatcatcatcatcttcagcGCTGACCCAAACCTTCCTAAAACCTCTGTGACGTCAGGAATGATTTAGTGGAGACAGGGAGGATATGAACTTTAATGATTCACGTGATCAGTCACCGATCACTGTGAACAGAAATGATTCGTAAGATCGATTCAGGAGCGAATTTCATAACAAATAGTCACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU971 lncRNA downstream 2491 2556243 ~ 2558864 (-) True G638
XR_006251814.1 lncRNA downstream 9094 2548924 ~ 2552261 (-) True LOC122351916
TU1005 lncRNA downstream 9195 2548924 ~ 2552160 (-) False LOC122351916
TU988 lncRNA downstream 45180 2515654 ~ 2516175 (-) True G647
TU973 lncRNA downstream 50666 2474322 ~ 2510689 (-) True G640
TU995 lncRNA upstream 225 2562191 ~ 2564410 (-) True G652
TU1015 lncRNA upstream 90751 2652717 ~ 2654832 (-) True G666
TU1043 lncRNA upstream 178261 2740227 ~ 2742428 (-) True G681
XR_006251760.1 lncRNA upstream 259222 2821188 ~ 2833731 (-) True LOC122351434
TU1059 lncRNA upstream 504845 3066811 ~ 3070069 (-) True G692
XM_043248069.1 mRNA downstream 1016 2559530 ~ 2560339 (-) True LOC122351178
XM_043246746.1 mRNA downstream 16369 2540488 ~ 2544986 (-) True f7l
XM_043246732.1 mRNA downstream 20940 2536351 ~ 2540415 (-) True f7
XM_043241463.1 mRNA downstream 26702 2530896 ~ 2534653 (-) True f7i
XM_043241449.1 mRNA downstream 31867 2524609 ~ 2529488 (-) True f10
XM_043249354.1 mRNA upstream 12776 2574742 ~ 2588258 (-) True pou2f1a
XM_043248783.1 mRNA upstream 27681 2589647 ~ 2597889 (-) True dusp27
XM_043248789.1 mRNA upstream 27681 2589647 ~ 2597850 (-) False dusp27
XM_043250896.1 mRNA upstream 42438 2604404 ~ 2628263 (-) True LOC122353060
XM_043240380.1 mRNA upstream 138524 2700490 ~ 2704267 (-) True LOC122345881
XR_006250784.1 other downstream 956371 1594758 ~ 1604984 (-) False LOC122343438
XR_006252053.1 other downstream 1431718 1129499 ~ 1129637 (-) True LOC122353706
XR_006252043.1 other downstream 1933537 627700 ~ 627818 (-) True LOC122353666
unassigned_transcript_1 other downstream 2122227 439054 ~ 439128 (-) True trnag-gcc
TU105 other downstream 2125230 435808 ~ 436125 (-) True G67
TU999 other upstream 126799 2688765 ~ 2689464 (-) True G654
TU1152 other upstream 1445874 4007840 ~ 4014287 (-) True G782
TU1193 other upstream 1736344 4298310 ~ 4299193 (-) True G820
XR_006252050.1 other upstream 3215605 5777571 ~ 5777657 (-) True LOC122353693
XR_006251180.1 other upstream 3284110 5846076 ~ 5853244 (-) False LOC122346875

Expression Profile