RNA id: XM_043224891.1


Basic Information

Item Value
RNA id XM_043224891.1
length 1804
RNA type mRNA
GC content 0.54
exon number 8
gene id LOC122328837
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 2758083 ~ 2782184 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gagagagggagagagggattGCTACTTTCTCTCCGCTgatagaaacacacagcagaagTTGAGAGCGCGCCGCTCCGGATCTATTCTGGAGGCTTCTCTGCTCTGCTCGCACACGCGTTCGTTCCGAGCGGATCCGTCGGAGAATTCTGCTATGAGCCGGATGCGACAGAAGGCGTGATTGATCATTGATGAGCGATTGCATGATTGAAACATTAGTCCACCTGCAGCTGGAGACGCCGGTGCGCTGAGCGCGTCTTGCGGGTTTTGCGCTTTTACGCATCGGCTGGATTTGCGCGCAGGAGGGATGTTGAAGACACCTGTCGTGGTTTTCACTTCTTTATCGCTGCTGTTGTCGCTGTCATGTGCTGGAGATGTAAAATCGCGCAGCTGCAGCGATGTGCGCCAGGCGTTCACGACCAAAGGCTTCAGTCTCCATAATGTGCCACATCAGGAGATATCAGGTGAACATCTGCGGGTCTGCTCCCAGGGCTACACCTGCTGCACTTCAGACATGGAGGACCGGCTCGGCCAGCAGAGCAAACTGGATTTCGAGAAATTAGTGGAAGAGAACAGCCACACCATTAGGACCATATTTACCTCCAGGCATAAAATGTTTGACGAATTCTTTCTGGAGTTGCTGGACAACTCGGAAAAGTCTCTGAACGACATGTTCGTGCGCACATACGGCAAACTGTACACGCACAACTCGGAGATGTTCGAGGACCTGTTCTCGGAGCTCAAGCGCTACTACACCGGCGGAAACGTCAACCTGGAGGAAGTGCTGAACGACTTCTGGTCCAGACTCCTGGAGCGCATGTTCCAGCTGCTCAACTCTCAGTACACCTTCACAGACGACTATCTGGAGTGCATCAGCAAGTACACCGACCAGTTAAAGCCCTTCGGAGACGTGCCACGCAAGCTCAAGGCTCAGGTCACCAAGGCCTTTATCGCGGCGCGCTCCTTCGTTCAAGGACTCATGGTGGGTCGGGAAGTGGCCAACAGAGTGGCAAAGGTCAATATATCTCCAGGTTGCAGTAAAGCACTGACTAAAATGCTGTACTGTCCGTACTGTGGAGGAATGCCAGGCCTCAAACCCTGCTCCAACTACTGCCAGAACGTCATGCGGGGCTGCCTGGCCAACCAAGCCGACCTGGACCCCGAGTGGAACCTCTTCATCGATGCCATGCTGCTGGTGGCTGACAGACTGGAAGGGCCCTTCAACATCGAGGCCGTCATGGAGCCCATAGATGTGAAGATCTCTGAGGCCATCATGGCCATGCAGGACAACAGCATGCAGGTTTCATCCAAGGTGTTTCAGGGATGCGGTCATCCCAAAGCAGCTGGAGTGGGCCGATCTGCCCGCGGGATCTCGGATGTGTTCAACAGTCGCTTCAGACCCTACAGTCCAGAAGAGAGGCCGACCACGGCAGCCGGCACCAGCCTGGACAGACTGGTGATCGACATTAAGGAGAAGCTGAAGGAGTCGAACAAATTCTGGTCGTCGCTGCCAGACGGCATCTGTGCAGAGGACGAAGTGACTGACCCAGATGAGGAGCAGTGCTGGAACAGTCACACAAAGGGAAGATACTTCCCTGAAGTTGTAAAAGACGGCCTGACGAACCAGCTCAACAACCCAGAGGTGGAAGTGGACATCACGAGACCGGACACCTTCATCAGACAGCAGATCATGACCCTGAGAGTGATGACCAACAAGCTGCGAAACGCTTACAACGGCAAAGACGTCTACTTCCAGGACTCCAGTGAGTcgcttcctttaaaaaaaaaataaaaaagtgtcaGAAAC

Function

GO:

id name namespace
GO:0031225 anchored component of membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0043395 heparan sulfate proteoglycan binding molecular_function

KEGG:

id description
K08112 GPC6; glypican 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU796 lncRNA upstream 27363 2726300 ~ 2730720 (+) True G546
TU785 lncRNA upstream 37160 2703522 ~ 2720923 (+) True G538
TU769 lncRNA upstream 130679 2626045 ~ 2627404 (+) True G527
TU722 lncRNA upstream 152006 2603191 ~ 2606077 (+) True G486
TU760 lncRNA upstream 169075 2588687 ~ 2589008 (+) True G518
TU1087 lncRNA downstream 503765 3285949 ~ 3286202 (+) True G719
TU1141 lncRNA downstream 938080 3720264 ~ 3720539 (+) True G771
XR_006250463.1 lncRNA downstream 1237913 4020097 ~ 4024338 (+) True LOC122341420
XR_006251095.1 lncRNA downstream 1427225 4209409 ~ 4218600 (+) True LOC122346127
XR_006251103.1 lncRNA downstream 1437058 4219242 ~ 4221288 (+) True LOC122346159
XM_043235163.1 mRNA upstream 15672 2739677 ~ 2742411 (+) True rpl24
XM_043240364.1 mRNA upstream 57859 2691742 ~ 2700224 (+) True tmem39a
XM_043240370.1 mRNA upstream 57859 2691746 ~ 2700224 (+) False tmem39a
XM_043249376.1 mRNA upstream 67318 2678298 ~ 2690765 (+) True ildr1a
XM_043248316.1 mRNA upstream 82054 2656133 ~ 2676029 (+) False LOC122351317
XM_043246568.1 mRNA downstream 159586 2941770 ~ 3120820 (+) True LOC122350229
XM_043246576.1 mRNA downstream 159586 2941770 ~ 3120820 (+) False LOC122350229
XM_043251222.1 mRNA downstream 1022415 3804599 ~ 3817996 (+) True slitrk6
XM_043249780.1 mRNA downstream 1225591 4007775 ~ 4011370 (+) True LOC122352357
XM_043236152.1 mRNA downstream 1439099 4221283 ~ 4232503 (+) True LOC122342374
XR_006252051.1 other upstream 15871 2742079 ~ 2742212 (+) True LOC122353699
TU717 other upstream 161781 2594931 ~ 2596302 (+) True G482
TU696 other upstream 230839 2524525 ~ 2527244 (+) True G474
TU718 other upstream 244224 2511721 ~ 2513859 (+) False pcid2
TU731 other upstream 272095 2483673 ~ 2485988 (+) False grtp1a
TU1095 other downstream 552474 3334658 ~ 3340876 (+) True G727
TU1118 other downstream 854523 3636707 ~ 3699093 (+) True G749
TU1197 other downstream 1574514 4356698 ~ 4357260 (+) True G824
TU1199 other downstream 1575823 4358007 ~ 4358296 (+) True G826
XR_006251076.1 other downstream 2155999 4938183 ~ 4944841 (+) True prkag3a

Expression Profile