RNA id: XM_043235704.1


Basic Information

Item Value
RNA id XM_043235704.1
length 5043
RNA type mRNA
GC content 0.48
exon number 27
gene id farp1
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 1050746 ~ 1116435 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGGCTGGAGGCGGTGTTTTATTGTATGAAATCAGTTCGGGATCAGTTCAGTCATGGCGTCTGGAAAGACGGTGGACTGCGGCGCTTCCCGCGAATAGCCGCGAACAAACCGACCTCACGCGACTCCGGCCGCTGCTCTGCGCGTTCCTCCCGCGGAATATCGTTTAACGGCACGGTCGCGGAGCTGCCCGGACGCAAGGAGCGCTTATCCAGCGGCGAAGGTGGGCTTGCAGCAGTATGGTGGAGCCAGAGGAGCGGCCCTCGGTGGCGGGCCAGAGGCTTGGGGCCCCTGAGAGCATGGGCATCAGTACGTTGGAGCCTGGCCAGCGGCCCCCCACCATGCCCCCCGGCAGACAGATCTCCATCCGGGTCCAGATGCTGGATGACACTCAGGAAGTCTTTGAGGTCTCGCAACGGGCTCCAGGGAAGGTGCTGTTTGACCTGGTTTGTGCTCACCTGAACCTCATCGAGGGAGATTACTTCGGTTTGGAGTTTCAGGACCAGCGTAAAATGACCGTCTGGCTGGATCTGCTGAAGCCCATTTTAAAGCAAATCCGACGACCCAAGAACACCATCCTGCGCTTCGTGGTGAAGTTCTTCCCTCCCGATCACACACAGCTGCTGGAAGAGCTCACCAGGTATCTTTTCGCCTTGCAGATCAAGCACGACCTGGCCTGTGGACGTTTGACCTGCAACGAAAGCAGCGCCGCCCTGCTGGTGTCTCATATAGTGCAATCTGAGATTGGAGACTTTGACGAGGTGCAGTGCAAACAACATCTActcaacaataaatacattccCGAGCAGGACACACTGATGGACAAGATCATTGAATACCATCGGAAACACGGCGGGCAGACACCAGCTGAATCGGACTACCAGCTTTTGGAGATCGCAAGAAGACTTGAGATGTATGGAGTGCGTCTTCACCCCGCAAAAGATCGCGAGGGTACGAAGCTAAGCCTCGCCGTGGCCCATTCTGGTGTGCTGGTCTTTCAGGGACACaccaaaataaatgctttcaacTGGTCTAAAGTCCGCAAGCTGAGCTTCAAAAGGAAGCGCTTTCTCATAAAACTACGACCTGACTTAAATCAGAGTAACTGTCAGGATACTCTGGAGTTTATGATGGGAAGCAGGGACTGCTGCAAAGTGTTTTGGAAAATATGCGTGGAGTATCATGCCTTTTTCCGCCTGTTCGAAGAACCCAAACCCAAGCCCAAACCGGTTTTATTCACCAGGGGTTCTTCTTTCAGGTTCAGcGGCCGCACACAAAGGCAGGTGATTGATTATGTAAAGGACTCTGAATTCAAAAAGGTCCCTTTTGAAAGaaaacacagtaaaatccAGTCCAACAGCGGCCTTTCTCCATTCCCACCCAGGCTGTGTGCTGAGGGTCAAGGAGAGAGGAATGCCAGTGCTTCAGTACACAAGGCGGACTCCCCTGTTGGGCGCACCCAAGTGACTGTTGAAAACCCAACTCTCCAGCGTTACACTGGGAGTCTAACCTCACAGACCAATGGATGCCGAAATGGGACCCATGATGAGGCGGATGCTCGATTAAAGCCATCCCCGTCCAAGCAGCAGGCCGAGCATCTGAGCACAGGTCTAGCATCCCATGCTGCCAAGGGTCCGGTTTCCAGGAGCCCTCAGAGCAGCGAGTCTCCGTCTGCAGGCCAGGTGATGGTGAACGGCCAGAAACAGAGTCTCAGCCTTGGCCAGAGTCCAGACGGACGGCAGCCTTCGCCTCTCACAAGCCCCTTACTGACGGACGCCGGCTTCGTCCGCACAGACGACGAGGATGAGGTTCGGAGGAAGAGGTTCCCGACTGATAAAGCTTACTTCATCGCCAAAGAGCTCCTGACCACAGAGAGAACGTATCTGAAGGATCTGGAGGTCATTACTGTGTCCTTCCAGAAGTCTGTAGGGAAGGACGAGGCCATGCCGGACTCCTTGAGGAATCTCATATTTGCCAATTTTGAACCGGTGTATAAATTCCACGAGACGTTCCTGAAGGACGTGGAGCAGCGCCTGGCTCAATGGGAAGGTAGATCCAACGCACACATCAAAGGAGACTATCAGCGCGTTGGAGACGTAATGCTGGCAAATATCCAGGGTTTGAAGCTGCTCACGGCTCACCTTCAGAAGCATTCGGAGGCTCTGCTGGAGCTGGAGCGCGCGTGTCGCTCGTCCCGGAGGCTGGAGGGTCTGTGTCGAGACTTCGAGCTGCAGAAGGTGTGTTACCTGCCCCTCAACATCTTCTTCCTGCGCCCGCTGCACCGTCTCATGCACTACAAGCAGATCCTGGAGCGCCTGTGCAAACACTACCCACCGACACACGACGACTTCAGAGACTCGCGAGCTGCGCTTGCGGATATCTCTGAGATGGTCGTGCAGCTTCAAGGCACCCTCATCAAGATGGAGAACTTCCAGAAGCTCCTCGAGCTCAAGAAAGACCTCACTGGCGTCGACAACCTCGCCGTTCCTGGACGGGAGTTTATCAGGCTTGGCTGTCTCAGCAAACTCTCTGGAAAAGGTCTACAGCAGAGGATGTTCTTCCTGTTCAATGATGTTCTGATGTACACAAGTCGAGGAATGACGGCCTCCAATCAGTTCAAAGTTCACGGCCAGCTTCCTCTGTACGGCATGACGaTCCGGGAGAGCGAGGACGAGTGGGGCGTCCCACATTCCTTCACTCTGTTTGGACAGAGACAGTCCGTCGTCGTGGCAGCCAGCTCGGCGTCTGAGATGGAGAAGTGGGTGGAGGACATCAGGATGGCCATTGAACTGGCGGACAAATGCAACGGCTCCTCAGAGATCCTGTCCAGCAGCTTCACCGACAGCAAATCCCCCGAGGAGTCTAGCGCCGACCAGGAGTCGGAGGACGACCTGAGCGCCTCTCGGACGTCTCTGGAGCGGCAGGCTCCTCACCGTGGTAACACCACGGTTCACGTGTGCTGGCATCGCAACACCAGCGTGTCCATGGTGGACTTTAGCGTAGCCCTCGAGAATCAGCTCTCTGGGAATCTGCTGAGAAAGTTCAAGAACAGCAACGGCTGGCAGAAGTTATGGGTGGTCTTCACCAACTTCTGCCTGTTCTTCTACAAAACACACCAGGACGAGTATCCTCTGGCCAGCCTTCCTCTGCTGGGATACTCCATCACCGTTCCCTCCGAGTCCGAGAACATCCACAAAGACTACGTCTTCAAGCTCCATTTCAAATCACACGTGTACTACTTCAGATCGGAGAGCGAGTACACCTTCGAGAGGTGGATGGAGGTGATCCGCAGCGCCACCTGCTCGTCCAGTCACATCCGCTCTCTGAGCCGCAAAGAGCCACACGTCTACTGaccaaagacacacacacacacacacacacacacacacacgtcaggtTCTCTATCAGGTCCTCTCTACACACTATAACACAGTTTTTCGTGTGCTATATCGTCGTTTCACTTTACTGAAAATTTGCAAATGCTTTGAAGGGTTGAGATGGAGGTCGGtgccagaaacacacacacacacacacacacacacacacacacacacactctatcatCACAACATCAGGTCGAAGCCAAACACTTCCAGTTCCTTTCAGTGCGTGAAGACACAATATCCTCGTTAGTAAACCGTGGTCCTCCTTCATGAAACCCAAGAGCTAGTTTGTGTAAACCGTGCATACGTTTGAGAAGAATGCCCTCGTGAGAGgtttattgaattaaatgcattggTCATGTTGAATGCCGTGGCTCGTTCTTACGAATGCTTCATCGTTTTGTGTGTAAGAGTGTTTTCCGAACGCTTTATTGGACGCTGTGGTGCACGTGAGCTGGATGCCAGGGTTTATTCTGAAAACGGTTTACGTCTGAGTTAGTTCTGCGGGTGTTTCATGAACGAGGCCCTCCggactgtttttaaatgtactgtagTATCAGCTTTTAATGCTGACTACTGCTCTGATGTTTCTAAAGGGGTGACGCTTTCTGTCTACATTTCAGTCATAAAAGAGAAATCTGGGAAAAAAGTGCAGGTCATATTCACCCCAACATTTATAAGGgaaagattgtttttttttttgcattttcatgacAGTTTGccctaaaattattattttaatgccaaaaaaatattaaaattgttagTGTATGTAAAGGTATTATTTGTCGTGCAGAATTgcgtttattaataaaaagaaactaattttcattattgttaaaaaaataataataattggttttgctgcaaaataatattttaaagaataaatctttggctgaaatgttattttgcacCAAAGCACAATataatttcttcatttctttatatgaagattgttattgtttatttcagtttgccCCGAAATCTTGTAAGAATGTAATGCAAtagtattatcattttttttttcctaatttcaGTTCAAACAAAACTGTCTGGTTTTCATTgctctattaaataaattgatgtcacaagtaaaaaaaaaattattataaaaaaaaataaaacattttctttttggtgcAAAATAAGGTTTcgcttttcactttttttaataatttttatttttatttgtatttgtattttttttgtggggGGAGGGTGGAATGACCTGCTGGTCCCGTAGGCCGCGTCTATGCACAAGCtggatttgtaatgttttaggCCTAAGATGTACGGCACATGCTGCCTTCAAGCGTTTGTATCACACTCAAACCTTTCTTTTGTAGGATGTCATTTTTATACGAGTTTTGATACTAACTGTGAAGAGCTCCACGCTGGTTTCATGCAGTCCCTCGTAGTTAGCCACTATTCTGTCATGGTGCaagaaacacaacaaaagaAGGAAGCCGGCTGCCTTTTGTCCAACTGCTTGAGTGCCAAAATTCTTctctttaatctttttttaagcatttggagcattttaattctttcttaattcatatatatatataaaaaaaaatcacaatatggATTATATGttgaaagaaatgtatgtttGACGGTGCGTGAATATGTTCAGAATAAATCCATATATCTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU328 lncRNA downstream 76777 973746 ~ 973969 (-) True G231
TU177 lncRNA downstream 160159 890244 ~ 890587 (-) True G125
TU158 lncRNA downstream 302382 741070 ~ 748364 (-) False LOC122342053
TU141 lncRNA downstream 326710 723745 ~ 724036 (-) True G99
TU111 lncRNA downstream 602106 448328 ~ 448640 (-) True G73
TU331 lncRNA upstream 50082 1166508 ~ 1212143 (-) False mbnl2
XR_006251226.1 lncRNA upstream 139763 1256189 ~ 1263203 (-) True LOC122347488
TU355 lncRNA upstream 166412 1282838 ~ 1284809 (-) True G244
TU361 lncRNA upstream 227872 1344298 ~ 1346789 (-) True G247
TU386 lncRNA upstream 324662 1441088 ~ 1441512 (-) True G260
XM_043235840.1 mRNA downstream 224520 766226 ~ 826226 (-) True LOC122342059
XM_043235838.1 mRNA downstream 304762 738137 ~ 745984 (-) True LOC122342053
XM_043249769.1 mRNA downstream 617068 422900 ~ 433678 (-) False lztfl1
XM_043249768.1 mRNA downstream 617068 422900 ~ 433678 (-) True lztfl1
XM_043241388.1 mRNA downstream 642660 404682 ~ 408086 (-) True ccr9b
XM_043239696.1 mRNA upstream 1415 1117841 ~ 1137065 (-) True kpnb3
XM_043242829.1 mRNA upstream 32246 1148672 ~ 1164935 (-) True rap2ab
XM_043242651.1 mRNA upstream 50261 1166687 ~ 1231647 (-) False mbnl2
XM_043242734.1 mRNA upstream 50261 1166687 ~ 1231647 (-) False mbnl2
XM_043242706.1 mRNA upstream 50261 1166687 ~ 1231646 (-) False mbnl2
XR_006252043.1 other downstream 422928 627700 ~ 627818 (-) True LOC122353666
unassigned_transcript_1 other downstream 611618 439054 ~ 439128 (-) True trnag-gcc
TU105 other downstream 614621 435808 ~ 436125 (-) True G67
TU47 other downstream 863661 186420 ~ 187085 (-) True G20
XR_006252053.1 other upstream 13073 1129499 ~ 1129637 (-) True LOC122353706
XR_006250784.1 other upstream 478332 1594758 ~ 1604984 (-) False LOC122343438
TU999 other upstream 1572339 2688765 ~ 2689464 (-) True G654
TU1152 other upstream 2891414 4007840 ~ 4014287 (-) True G782
TU1193 other upstream 3181884 4298310 ~ 4299193 (-) True G820

Expression Profile