RNA id: XM_043235840.1


Basic Information

Item Value
RNA id XM_043235840.1
length 4168
RNA type mRNA
GC content 0.49
exon number 18
gene id LOC122342059
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 766226 ~ 826226 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGTCTGTTGGAAGTCTGGCGCTCATCCCCTCCTCCGGCTCTGGGGGCTGTCAAGGCGTGAGCGTAGACAGAGATGGATTGCAGGTGGCTCTCAGGGCCCAGGTGGCACCTGAGAAGCGTTGCCTGCCCATGCAGATTCAGAGGACTCGCATGAAGTCACGCAAATTCCTGCACCCGCTCCCATGCTTGGCCTCTCACTGGTCGCTAGAAGCCATCGGTGAGCCGGTGAGTATAAACTGGTTCAGTCCTCAAGGAGAGCGTATCATCTCCAATCAGAGAGTGATCGTGCACACGGAGGGCGTCCGCTCCAGGCTCACCATCTACAACGCCATCATCGAGGACGCTGGGATATACCGATGCCAGGCTGTGGACGCCAAGGGACAGAGCCAGGAGGCCACAGTGGTGCTGGAGATTTACCAGAAGCTGACCTTCCGCGAGGTGAAGACACCGCAGGAGTTTCGTCAGAGCGAGGACGCCGAGGTCGTCTGTGACGTCATCAGTTCCCCGGTGCCGGCCGTGTCCTGGTTCTACAAGAACCGAGAAATCACGTCTGAGCCCAACAGCAGACTCCAGGTGCTTCCCAGCAACAACCTGCAGATCCTGCGAGTGAGTAAAGCCGACGAGGGAGTGTACCGCTGTGAGGCGCGAGTGGAGGCCCGAGGAGAAATCGATTTCAGGGACATCGTGGTGCTGGTCAACGTTCCTCCGGTTCTGTCCGTGCCGCAGCAGTCGTTCAACGCCACCGCAGACTACCAGGAGTCAGTGACGTTCACCTGCATCACGTCCGGCTCCCCCGACCCTCAGGTGACCTGGTACTGGAAGGGAGTGCACCTCCAGGAATCGGAGCGGTATGTAATGAGAGCTCGAGGTACGACGCTCACCGTTCGAAACATTCAACAGGACGACGGGGGCTCCTACACCTGCAAAGCCTCTAACAAGGCGGGAGAAGTTGAGCACGAACTGTTTCTCAAGGTTTTTGTTCAGCCACACATTACTAAGCTAAGGAATGTGACAGCTGTGGAAGGCAGCGCTGCTATGATCTCCTGCAAGGCTGAAGGTGAACCTTTGCCGGAAATCTCCTGGAGGCGAGCAAGTGATGGACACAGCTTTTCAGATGGAGATAAGaGTTCAGATGGCCGTGTGGAGGTGCGAGGCCGTTATGGTGAATCCATGCTGACTATTGTTGGAGTCAAGCTATCCGACTGGGGGCGCTTTGACTGTGAGGCTCTCAGCAGGATCGGTGGACATCAGAAGAGCATGTTCTTGGATATTGAGTATGCACCAAAGTTTCAGGCCAACCACACTATATTTTTCTCGTGGGAAGGGAACCCGGTGAACATTAGCTGTGATGTTATGTCTAACCCTCCGGCCACAATGCTGTGGAGACGGGAAAAGTTGACCATCCCTAGCGAGGGTGCTGGAAACATGCGTGTATACAGTGCCCCTGGCAGATCACTCCTCGAGGTTACCCCGATGTCAGACAGAGATTTTGGCCGTTACAACTGTACAGCCAGAAACAACATTGGAATGCGTTTTCAGGAGTTCATCCTAGCACAGGCAGATGTTCCCTCAAACCCTTACTCTGTTCGGCTGAGCTCTGTGGCACAGCGCGTGGCCACAGTTACCTTCACGAAACCAGACTCTCATGGCGGCGTACCCATCAGTTACTACCTGGTCAAATACAAAGACATCAGCTCACAGGACTGGAAGGATGTGAAATCACAGGGGACGCAGACAGTCGTGTTGCTCACTAACCTTGAGCCCAACACAACCTATGAGGTGAGAGTAGCCGCGGTGAACGGAAAAGGTCAAGGAGAGTTCAGCCGCATAGAAAGCTTTCAAACTCTGCCCATACGAGAGCCAAGTCCCCCTTCAGTTCAGGGTCAACGAGGGGTGGGTAAGGCGTACAGACTTGGTCTAGTCAAGCAGGATGATGGAGGAATGCCCATCCTGGAGTATATCgtcaaatacaaaacaGATAAAGAAGAGCAGTGGATGACAAAACTGGTTCCAGGTGTGAATGATTTCGTGTTGCTGCAACCGCTCCAGTGGAATACACAGTATGAGGTGGAAATCACTGCACGTAACGTCAAAGGCCTGTCTGAACCCACCTTCGTGAAGTTCTCCATGCCTCAGAAACCTGATATCACAGCAGATTCGCTGTTCAGCGGCCTAGGCCTGGGCGCAGTGGTTGGGCTGGGGTTAGCTGGCCTACTGCTGCTGCTCGTGCTAGTGGACGTCAGCTGCTTCTTCCTGCGCCAGTGCGGCCTGCTCATGTGCATCACCCGCAAGCTCTGCAGCAAAAAGACAGCTACTAGCGGCAAGAGCAAAGAGCTAGAGGAGGGCAAAGCTGCCTACCTGAAATTGCCACTAAAAGAGGAAAACGGTAAGGAGACGCTGAAACCAGACACGATCGAAATCAAAGTTCACGGTGACAACAGCCTACACATGACACAGGAGGACAGTAAAGCATAATGGAGGCCCTGCTATCCTCTAAAAGAACATGCAAAGTGAGCCACCCGGAGACCAACAGCAAGCAAACTAATGAGAATACAAGCAAGAACACGCCAACCAATTGTAAGATCTTTTGTTAGAGACTCGTCGTCGGGGTATCAGAAGAGGCCACGCGATAACTgctttgtgaaacatttttcGGAGGTTGCCGCTCAACAAACAGGCTCCTGTTTATTTGTGCTTGTTCTTGCTTGTTTTGGGCCTTTTTTGGGAGggggttgtttttttgtttttgttttttcaaggcTTTGCTGTTGCTTTGAGTCTGATTCTTTGTTACTTGAAAAGGTGGGTTTACCCCGTAAGCTTCATgttttctcttgctctctcatCCTCTCTTTCTTTGGGATCCGGCTGTTGCACCTTTCCAGTGTGGTTGCTCAAACATTGCTTTTTAATGCGGTACGCGTGGAAATCCCCCACCTCTCTTTGCGGTCCGTGTTGTAGTTTTGGGTCACTGTTTGGGTAACGTGTTTATTTTCTAGCCTTTTTCCCACTATATGTCTCGCCCAAATGCAAAGAAATTACAGAATGCTCAGTATTAAAGCGAGGATCAACCACACTTGACCTCAAACTGAGTAAATGGTACATGGTTGGTCCCGGTATTGAGCGCTGATACATGCCCAACTCTTCGGCTTGAACGATGAATTTCTCATAGATTACAAGTGTTTTTGTGGATGAAAATATGTCCTCGTTTTAAACGCTATTGTTTCAGAGTCAAAGGAGCATAGTATGAGTCATACTTTCATGTCAAGATATTtcggaaacaaaaaaaaagagtgcattTCCTTTAGAAGCGTGTGAAAGTTTGTAAGTGGGTGCATCTGAGCATGGACGTGTTGTCTTTGGGGTGTTTGGATGCGTGTACTAGCGAGCATGGAGTGTAGAAAGAGAGGGACATGTAAAGAAAGTAGAGGTTGCCGAGTTTTACGTGAATATAAggaaaacattataaatacctATTCAAGTACATCAATGTAAATATACTTGTATTTCTTTGGAATGtttcaaaagcagaaaaaaatatgattcattCCAGGTTCTGTCTTAGTGTCGCACATGACTGATTATGAATTATGTTTATCGAAATTGGCTGTCTCTCAAAAATGATACCGTGTCCAACAGACTGAAAGATCTCAAGAGGCAAAGAAGGACAGATGCCCTGGAAACTGGGTACAGATGCATCACAGAGGTATCGCTATAAAATGAGCTTTTTGGAAATCAAATCCATGCCATTTATGGATCTTTTAAAAGACGACGCTTTGGTTGTATGAGAGAGGAGGGGTTTGCCGGTGAACAAGATCTTAGTGTTGCAATAACATGGATGGGAATGGCATACTGCTTAGACGCATGCTCATTTTACCAGTCAAGAGTTTCAGGATTAAGATCCATGAGGTCTTGAGATCCATGTTCATGTTCACTTTAGTTTGGGCCAACAAATTTAtcccaaaaaaagttttttgcattatttcagcATTGTGTTTCATATACACCTGGCTCTCCACATTCAGCGCAATAGAACATTGTGGAATGTTGCCCATTTCTTTTCAGCAATCTAAAGGGAGCACTCCATAAGCCCAACTGTACTTGTGGAATTCTTGTAATCCAGTGTAATTTTTCTTCTGTAAATAAAAGTGTCccaatataaaagtta

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU158 lncRNA downstream 17862 741070 ~ 748364 (-) False LOC122342053
TU141 lncRNA downstream 42190 723745 ~ 724036 (-) True G99
TU111 lncRNA downstream 317586 448328 ~ 448640 (-) True G73
TU110 lncRNA downstream 318344 447508 ~ 447882 (-) True G72
TU108 lncRNA downstream 324017 441879 ~ 442209 (-) True G70
TU177 lncRNA upstream 64018 890244 ~ 890587 (-) True G125
TU328 lncRNA upstream 147520 973746 ~ 973969 (-) True G231
TU339 lncRNA upstream 249962 1076188 ~ 1212143 (-) False mbnl2
TU331 lncRNA upstream 340282 1166508 ~ 1212143 (-) False mbnl2
XR_006251226.1 lncRNA upstream 429963 1256189 ~ 1263203 (-) True LOC122347488
XM_043235838.1 mRNA downstream 20242 738137 ~ 745984 (-) True LOC122342053
XM_043249769.1 mRNA downstream 332548 422900 ~ 433678 (-) False lztfl1
XM_043249768.1 mRNA downstream 332548 422900 ~ 433678 (-) True lztfl1
XM_043241388.1 mRNA downstream 358140 404682 ~ 408086 (-) True ccr9b
XM_043247627.1 mRNA downstream 404623 210723 ~ 361603 (-) True gli3
XM_043235714.1 mRNA upstream 224520 1050746 ~ 1116435 (-) True farp1
XM_043235704.1 mRNA upstream 224520 1050746 ~ 1116426 (-) False farp1
XM_043239696.1 mRNA upstream 291615 1117841 ~ 1137065 (-) True kpnb3
XM_043242829.1 mRNA upstream 322446 1148672 ~ 1164935 (-) True rap2ab
XM_043242651.1 mRNA upstream 340461 1166687 ~ 1231647 (-) False mbnl2
XR_006252043.1 other downstream 138408 627700 ~ 627818 (-) True LOC122353666
unassigned_transcript_1 other downstream 327098 439054 ~ 439128 (-) True trnag-gcc
TU105 other downstream 330101 435808 ~ 436125 (-) True G67
TU47 other downstream 579141 186420 ~ 187085 (-) True G20
XR_006252053.1 other upstream 303273 1129499 ~ 1129637 (-) True LOC122353706
XR_006250784.1 other upstream 768532 1594758 ~ 1604984 (-) False LOC122343438
TU999 other upstream 1862539 2688765 ~ 2689464 (-) True G654
TU1152 other upstream 3181614 4007840 ~ 4014287 (-) True G782
TU1193 other upstream 3472084 4298310 ~ 4299193 (-) True G820

Expression Profile