RNA id: XM_043237922.1


Basic Information

Item Value
RNA id XM_043237922.1
length 4070
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC122343438
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 1592069 ~ 1604984 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCTGCTGAGGCATTCTGGGATGCTGGCGGACTCAGCGACTCTTCTACTGTGATGGCGACCAATATCGAGCAGATTTTCAGGGATTTTGTAATGAATAAGATTAAAGAAATCGAAGacgaaacacaagaaaacagTGTGACAGATGAGCCACAGTCTGAACCTGTGACGGAGACGAGAGAAGATGGGCCTAAGGAAGAAAAAATGAACACCCCGACAGATAAAGTCACGCACACTGACCTCAAAGACAACCATGATGTGGAGGACACCAGCACTAAACACAGGAAGagtaaaaagcacaaaaaacacaaaagcaaaaagaagaaaaagaaacgcaAAGAAGGAAAAGCCAGCAGCTCGGACACGGAGTCCGACAAAGAGACTCAAGAAAGtggaaagaaaaagaagagaaagaaaaagaaaaaaagcaaagatgCAGACAAAGTGAAAAAATCGGTCTCACGATCCGAGAGCTCTTCTGCATCTGGCTCTGATTCTGAGTCCGAATCGAAACCTTCAAGTGAAAATACGAAGTCCTCTTCAGCAGGTCAGTCAGAGCTCAGAGACTCGTGTGGTGTTGGTAAGCCCCGGGAGCTGCCTGACATTATTCCCAAGATGGAGAATTCGGTCCATAAAAGCGAAGAAAACGAAAGGCCCAAGGAGAAGAAAAGTTCGTCTAAAACCAAGGAGAGCTCCAGAGGAAGACGGACCAGATCAAGATCACCCAGACGGAAATCAGAACGAAAGTCAACCTCGCGCTCTAGAAACGGCTCCAAAAAGAGGTTTCATCAACGGAAAGAAAGAAGTAGATCCAGGTCAAAGAGACGGCACAGTCGGTCCAGGTCACGTTCTGCCAGAAGAGGCAGATGTTCAAGATCCAGGTCGCGCTCCAGGCGAACTAGATCAAGGTCCGTTGTGATCCTGAGGAAGAACAGAAGGTCTGCAACAAAGTCTAGGTCTCGTTCGCCGCGGCGTAGACGGCGCTCTAGGAGCAAGTCTCGAAGCAGAACGAAACCTTCGAAGTCGAGGTCCGTTTCGAGGTCGAGGTCTGATTTGAAACCAGAAACCGAATCGGTTAGGAACGATACGGATCCAGTGGAAAAAAGTGAAAGTTCTGAAATGCAGACAAATGTGCCTCAAGACACAACTGAGAATGGAAAAAGTCCAACCAAGCCGGCTGAGACTCCATCCAGCATCACCAATTCTGGCTTTAAAGGGTCGTGGCGACCAGTTCCCTTCTTGGCCGAGCCACCTGAGACCAAGTCTTCCCAAAAGTGCATTACACCTGAGGTGCCTTTGGAAGTGACCGGTgtatctgaagaaccttctacGTTCTCGACCGCTGCGCCAAAAGATTCAGAGTGTGCTGCCAATCCTGAGAAGGAGGAAACCGACGCCGATCCAGCTTTAACGGACTCCGCGTCTCCCGGTCACAAGACCTCCTCCAGATCCAAAGCCGCCGCGCGATCCAGGTCCAAGTCGGCGTCGAAAAAGAGAAAATCCAGGTCCAAGTCGCCCTCCGAAAGGAAGCCGCGCAAGTCCAGAACGAGGAAGTCGAGGTcgcccaaaaaaaaaaggtcgaGATCTCGTTCGCAAGGCCGCCGGAGGAAGTCCCGCACTCCGGACAGAAGCGGCCGCTCGAAATCGAGAAAGAGGTCTCGCTCGCGTTCCAGGAGGAGGTCCCGCTCCGGCTCGCGCTGGAGAAGAGGTTTCGGGAGCCGCGCGCTAAATCAGCGGGACCGGTGGAAACGAGAACCCAGCCGCTCTCCGGTCCTCATCCTCCGTAAGAAAAGGTCGACGTCCAGAACTCGACGCAGCGCCAGCAAAACACCTCCACGTCTTACAGAACTTGatAAGGAGCAGTTGCTGGAAATCGCTAAGGCTAATGCCGCGGCTATGTGTGCCAAGGCCGGCGTGCCGATCCCAGAGAGCCTCCGGCCCAGATCTATTCTTCAGCTGCCCTTGCCAAGCCCAAACCCCACATCCCTGTCTTTACCGTTGCCAGTGATGTCGAGCATGACCATGAACGCTGCTATGGCTAGCATGACCGCCGCCACCATGACCGCTGCTTTGTCCAGCATGGGTGCCTTGGCTTCCTTGCCGCAGCTGGCCCCGTTACCGACCATCGTCAACAAGCCGCCGTCTTCGGCCACGCCCAATCTCGCCAGCATCGAAGAAGCCAAAAAGAAAGTGACGAAACAGGCCAACAGCTTTAGCATTAAAGAGCTGACGGAGAGATGCAAGAAGATCGCCGAGAGTAAAGAGGAGATGGCCATCGCGAAACCACACGTGTCAGACGACGAAGAGGAGGAAAGGCTGGTTGGAGCTTCCCTTAAGGAGAGTAAGGGCATCGCGTTCAGTCTCGGTAACACCTCGTTGAAGCCGGCTGTCCGAACTGAAGCGGTCTTTGCGAAGGAGTTCCCAGTGTCCTCCGGCTCCCAGCACAGGAAGAAGGAGGCCGATGGTGCGTATGGAGAATGGGTGCCGGTTGAAAAGAAAGCGGAAAAGCCATCTGCGTCGAGTTCATCCGGGACTGAGGAGACCGGCAAGGACAATGATAGTGTCTTTCCTGAAGCACCTTCTCAACCTGTGGACATCACTTTGGCCGTCAGCGAGAGAGCGGTTGCCCAGAAGAGACTGGCGGAAAACCCTTTTGACATCAATGCCATGTGTATGCTGAATCGGGCTCAGGAGCAAGTTGATGCATGGGCCCAGTCGAACACGATCCCTGGCCTCTTCACAGGCTCCACCGGCGCTCAAGTGCTCTCATCTGATGAGCTCTCTAACAGCGGCCCGCAGGCCTGGATTAAGAAGGGTCAGTCCTTGTAGCTGCCTCTTTGCCACGGTCACAGTCAGGCCCCTTCTATTCACGTCAGATGCTCGATGCCGATGATGGGGGCCTAGGTACGTACGTCCTCCAGCACCCTTCCTTCTATTCATGTGGATTTGTGTGTGAACTGATGCATTTCTGCCTTGTCCTCCTGTCTGTTTGCGCTGAACCGACTCAGAGCCTGAGATCTGTTCAGGACGGTGTTCACGCTTCGCCTGCTGAAGGCTCGCAACTTATTACTCACGCGTTTAATGGAGAATACACACTGCCGCTGGAAGATGGGAATAACCTTGGGTGTTTTTGAGAGAAGTCCCTCGTGCTCGTTTGACAATtcgtgaaatatttttactttttcaaatggCCGTCTACCGCgtgaatatctgttaaaatgcaattttatttctgtcatcaaATCCAAATTTCGTTTAGCGTCGCGCGATCTTTCAGAGGTCATTTTCATATGTTTTCAGAGAAATAATTCTCTTTTTAACATCGCTAATAAATGGAAATCTCCGGTGACCTTATAAATGCCTTGGCTTTTATTCGGCAAGAATGcaataatttgatcaaaaggGAAAgtaatgcaaagaaaatacTTGGAaaatgtggagaaaaaaaatattaagcggcgagagtttattttaaaaatgataatcgGAAACGTTTCTGGAGCAGCAGGTCAGTAtattaatgatttctgaaggatcgtgtgacactgaagaccggagtaacgatgctgaaaatacagatacgatcacagaaataaattacgttttaactCGGGCACGCACGGAATCCCGctgtattaaattgtaataatatttcacaattattgcggtttttagtgcatttctgattaaataaatgaagcaaGAGAGACTTCatcaaaaatgttgaaaatcttaattattccaATCTTTTGGCCGgtagtgtatttatttctttatttaattatatttttacttgtgTAGTCATTTAGATCTACAGCAGGTGAGAAATGAAGGCCtctacatttaaacattttgcatattcttaaaaatagtttgaatagCCTTGTGAACTTCTACTTGTATCTAACGTTAACGTAAGCCGCTGCAGTTGAAGTGACGTGACCTGACTTCACCCGATGGAGCCGCCCTCTCACTGCGTGCCGTCTCTCTTGGTttgcctctctttctctctgtctggaTCTGTCTCGTTCCACTCAGGACCAGTTCCTGCGGGCGGCGCCGGTCTCGGGCG

Function

GO: NA

KEGG:

id description
K23718 SON; protein SON

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU454 lncRNA downstream 10177 1583891 ~ 1584684 (-) True G304
TU451 lncRNA downstream 12774 1580743 ~ 1582087 (-) True G303
TU436 lncRNA downstream 27329 1567038 ~ 1567532 (-) True G297
TU386 lncRNA downstream 153349 1441088 ~ 1441512 (-) True G260
TU361 lncRNA downstream 248072 1344298 ~ 1346789 (-) True G247
TU515 lncRNA upstream 178211 1783195 ~ 1784512 (-) True G347
TU528 lncRNA upstream 261656 1866640 ~ 1867365 (-) True G358
TU548 lncRNA upstream 284992 1889976 ~ 1893190 (-) True G372
TU560 lncRNA upstream 336967 1941951 ~ 1942933 (-) True G378
TU563 lncRNA upstream 342049 1947033 ~ 1947420 (-) True G380
XM_043235983.1 mRNA downstream 125760 1465437 ~ 1469101 (-) True urp2
XM_043246433.1 mRNA downstream 139790 1442791 ~ 1455071 (-) True rcan1b
XM_043246442.1 mRNA downstream 146347 1442791 ~ 1448514 (-) False rcan1b
XM_043247346.1 mRNA downstream 181915 1404578 ~ 1412946 (-) True LOC122350642
XM_043247451.1 mRNA downstream 192037 1392929 ~ 1402824 (-) True atp1a1a.1
XM_043262113.1 mRNA upstream 892 1605876 ~ 1612082 (-) False wu:fa56d06
XM_043262747.1 mRNA upstream 892 1605876 ~ 1612082 (-) False wu:fa56d06
XM_043263564.1 mRNA upstream 892 1605876 ~ 1612077 (-) False wu:fa56d06
XM_043259232.1 mRNA upstream 892 1605876 ~ 1612075 (-) False wu:fa56d06
XM_043261426.1 mRNA upstream 892 1605876 ~ 1612075 (-) False wu:fa56d06
XR_006252053.1 other downstream 465224 1129499 ~ 1129637 (-) True LOC122353706
XR_006252043.1 other downstream 967043 627700 ~ 627818 (-) True LOC122353666
unassigned_transcript_1 other downstream 1155733 439054 ~ 439128 (-) True trnag-gcc
TU105 other downstream 1158736 435808 ~ 436125 (-) True G67
TU47 other downstream 1407776 186420 ~ 187085 (-) True G20
TU999 other upstream 1083781 2688765 ~ 2689464 (-) True G654
TU1152 other upstream 2402856 4007840 ~ 4014287 (-) True G782
TU1193 other upstream 2693326 4298310 ~ 4299193 (-) True G820
XR_006252050.1 other upstream 4172587 5777571 ~ 5777657 (-) True LOC122353693
XR_006251180.1 other upstream 4241092 5846076 ~ 5853244 (-) False LOC122346875

Expression Profile