RNA id: XM_043238439.1


Basic Information

Item Value
RNA id XM_043238439.1
length 4213
RNA type mRNA
GC content 0.45
exon number 15
gene id prpf4bb
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 193211 ~ 205559 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTGGCCCTCCTCATAATCTGACTGCAGAAGAAAAGCACAGCGGGCTGCTGGTGAAACAAAATGGCCGATGTGGAAATGGATTTACGAAGCAAGAGACTTAATAACGGGCCAGAGGATTTGGAGAGTCCTGAGAAGAGTGGGAATGAGGATGAAAACGGTGACATGTCTGgagatgatgaagaggagggTGAGGAAGAAGTGGAGGTAAATGGGGAGAAGCAGGACAGTGGTTCCAAACATCACAGCAGTGGCAGCaaacacaagaaaaagaaacacaagcACCGCAGCaagcacaaaaaacacaaacatgcatctGAGGAAGATAAGGACCGCAAACGCAAACATAGACACAAGCATAAGAAGCACAGGCGCAAAGAGGAACCATCCTCTTCACCATCTGTGGCCACCAACAGGAGGGCTGAGGATGGCTCTCCATCACTGGGCAGTGCAACCCTTGATGACAAGGCGCTTCTTGAAGACCTTGAGAAACAAAGAGCACTGATTAAAGCTGAGCTGGACAGCCAGCTGATGGAGGGGAAGGTTCAGTCCGGAATGGGCCTGATTCTACAAGGTTACAATTCTGGCTCAGAAGAGGATGGAGAGGAACAGCGGGCACGTAATGGGGAGCAAGGGCAAAGAACCAGTGGGGGTAAAACACGCTCACCAAGGGACCAGATAAGTAGGGGGTGTAGATCTAAACGGGACTCAACAGACACCAGCAAACCAAGTGTTAAACGGCGCAGTCGCTCTCGTGAGAGAAGTGGTAAGGATGCTAAGCTTGAACGAATGACCAAAATTGTGAAAGAGACTGTTAAGGAGCGTAGCAAGTCCAAAGAGAAAAAACGCTCTCGTAGCAGGGATAAATCCAAAGAGCGTTTAAGGAAATCCCAGTCTCCAGCTGCAAGAAGACGCTCTGCAGAGAGAAAGTCAGATCAGAAGGGACGTTATGATCGACGTTCCTCTCCTCATATAGTTGAGAAGCGGGAACAAGTCACACAAAGATCAAACTCACGAGGACGCAAGAGCCCGTCACGAGATCAGCGATCTCACTCTAAAGATGCCCGGCTGGGTTGCTCAGACACCGATAGAGAAAAGAGGCCTGGTAAGTCTCCGTCTAAAGACACCTCATCTGGGAAAGAGAATCGATCTCCTCATCAGCGTCGAGCTCTTAGCCCTCAACGTCGACGCAGTTCCTCCCCTCGCCATAGGGACCGCCAGCCCAACCAGCCCCCATCGGGTTCTGCAGACCGGAGTTCTAAACTGAACCACTCACCGCCTAGAAACAGGTCACCAGTCAGGAGAAGACAAAGTCGCTCAAATGAGCGCCGGAGAGATTCCCCGTCCAGTAAACGTCGTCGTTTGGATGGAGCTGGGAGATCAAGGGAAACGAGTCCAGCACGGCGCAGAGTGAGCCGCTCACCACTCAGACGTAGGTCTGTATCACCACGGCGACAGCCTCGCTCCTCACCCAGAAGACGAAGTCGATCGCCCCTGAGACGCAGGTCTGCTGAAAGGGACCGATTTGGCCGGTCCAGACAACGACGATCCACCTCCAGAGAGCGTGAGAGGAGGAGGCGGCGAAGTCGGGATGAAGACAAGTTCAAGGGCAGTTTGTCAGAGGGTATGAAAGCAGACCAAGACTCCTCCTCTGAAGAAGTGATGGAGGACTTTGATGctgaagaggaagatgaagaggcTCTGATTGAACAGAGACGACAACAAAGACTTGCTATTGTCCAGaaatataaagcagtaaatgaggacagCAATATGGGCTCCATGGCATCAGAGCCCAGCAGTCCACAGAGCAGCACCCGAAGTCGTTCACCTTCCCCTGATGATATCCTGGAACGGGTAGCAGCTGATGTAAAGGAATATGAGCGAGAGAATGTAAACACTTTTGAGGCCAACATCAAAGCCAAGCACAACCTCATCGCTCAAGAGAAAGAAGGAGCCAACCCAAAGAAGCCCTCAGCACCCGACATGTTCACAGAGTCAGATGACATGTTTGCTGCAGATTTTGACAGTGCCCGACTGAGGGCTGCAGGTATTGGTAAAGATTTTAAGGAAAACCCCAATCTTAGGGATAACTGGACTGATGCGGAAGGATATTACCGTGTGAACATCGGTGAGATACTGGACAAGCGGTATGATGTGTATGGGTACACTGGACAGGGTGTATTCAGTAATGTGGTTAGAGCTAGAGACACTGCCCGTGCTGGCCAGGAGGTGGCAGTCAAGATAATCCGAAACAATGAGCTCATGCAGAAGACTGGACTGAAGGAGCTTGAATTTCTAAAGAAGCTGAATGATGCAGATCCTGATGATAAATTTCACTGTTTGCGGCTCTTCAGACACTTCTACCACAAACAGCATCTCTGTTTGGTTTTTGAGCCTCTCAGTATGAATCTGCGGGAAGTGCTTAAGAAGTATGGTAAAGACGTGGGTTTGCACATCAAGGCAGTTCGTTCCTATAGTCAGCAGCTCTTTTTGGCCCTCAAACTACTGAAACGCTGCAACATCCTACATGCTGACATCAAACCAGACAATATATTGGTGAATGAATCAAAGACCATTCTTAAACTCTGTGATTTCGGCTCTGCGTCTCATGTCGCTGACAATGAAATCACTCCCTACTTAGTCAGCAGATTCTACAGGGCACCTGAAATTGTCATTGGTAAACCGTATGATTATGGCATTGATATGTGGTCAGTTGGCTGCACTCTGTATGAGCTATACACTGGGAAGATCCTTTTCCCTGGCTCTTCTAACAACCACATGCTGAAGCTGGCCATGGATTTGAAGGGCAAGATGCCCAACAAGatGATCCGGAAAGGCCTGTTTAAAGATCAACATTTTGACCAGAACTTGAACTTCCTGTATATAGAGGTGGACAAAGTGACTGAAAGGGAGAAAGTAACTGTCATGAGCACCATTAACCCCACTAAAGATCTGCTCGCGGACATGATCGGAGGTCAGAGATTACCTGAGGATCAGAGAAAGAAGGTCATGCAGCTTAAAGATCTGTTGGACAGTACTCTGATGCTGGACCCAGCTAAACGCATCAGCATCAACCAAGCCCTACAGCACCTTTTCATTCAGGAGAAGATATGATGCTTTCATGTCTAACCTGTGACTGTCCATTGTCCAGGACTGAGCCAATAGACTCAAGTTCAGAATGTTTGTAATCATCACAAGACTttcaattttctatttttattcatgtttttctaGTGACTTTTGTTTTGCCCAATAATTTTTGATTCAGATCTCAGAATggtcttgtttttattgtacataTGAACACATTGTCATTCACTTGAGAGAGAGGCATGTTTAGCAATTATCAGACTTTGTCTTATTTAACTTTGGAAGTGACCAAAATGCTCAAAATGCAGCATAtaataggttaggttagtgttcaGATGTTAAAGGCAAGAAATGGCTGGGCAAGCATATAAGAGAGACAAATTATTTTGTTAGTTATAATGCAAATGCATCCTTTTTGGTGACCCATTTAAACCAGTGGCTTTAATTTAGATTTCTTTTATCTAATCAAGGAGTACACCACTTTTGCTAGTTGAAACAATACATAGTACTTCATGTAGAGCTGTTTAAAATATTGGTTTTGTTCTAGTACATTTATCTCAAATGATGCTAGAGATCACACTAGAATCCTACTTGTCCCATTTTATTTGTCACTGCCCTACAAGCCTGTCCTATTAAGAGATCAATTTTAGAAACAATTTAATGTACGCAGGTAGTTATCGTGTTAGAATCTTAGTGAATGATGCCAAATTGTCACTTTTCGACTGCTAAATTATGAATTTGCCTGTATTTCCAAAAACTCTAAAGCTGTTTTAATTTgagaaatttaattttgaataattagTATCTGTATGTTAGCCACTTGTTGCTAGTTATCTCTGGAGTTTGACACCACATTACAATCCAATTTCAGTATACCAGGCCTGAGATGATTTTTATAGTTGAAAGTCCCCAATGTTAAGGTTATCTGATAGGAAGTGCCTCCCTCGATgcctgcattaaaaaataaagtctcTCAGATATGCCCTGATAGATGGGTAATCACTTATTTTACtgtgtaaataatttagttttcaaagtgtaaaacgttttttttttcctaactgggatttttttgtttttttgaaataaacttgAAAGATATGATCGTGAAGGAAAATTAAAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08827 PRPF4B; serine/threonine-protein kinase PRP4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46 lncRNA downstream 15010 177676 ~ 178201 (-) True G19
TU45 lncRNA downstream 26884 166097 ~ 166327 (-) True G18
TU20 lncRNA downstream 140623 52167 ~ 52588 (-) True G6
TU19 lncRNA downstream 144684 47787 ~ 48527 (-) True G5
TU80 lncRNA upstream 13020 218579 ~ 221074 (-) True G50
TU81 lncRNA upstream 13370 218929 ~ 221328 (-) True G51
TU86 lncRNA upstream 187740 393299 ~ 393852 (-) True G56
TU104 lncRNA upstream 216573 422132 ~ 422409 (-) True G66
TU108 lncRNA upstream 236320 441879 ~ 442209 (-) True G70
XM_043247627.1 mRNA upstream 5164 210723 ~ 361603 (-) True gli3
XM_043241388.1 mRNA upstream 199123 404682 ~ 408086 (-) True ccr9b
XM_043249769.1 mRNA upstream 217341 422900 ~ 433678 (-) False lztfl1
XM_043249768.1 mRNA upstream 217341 422900 ~ 433678 (-) True lztfl1
XM_043235838.1 mRNA upstream 532578 738137 ~ 745984 (-) True LOC122342053
TU47 other downstream 6126 186420 ~ 187085 (-) True G20
TU105 other upstream 230249 435808 ~ 436125 (-) True G67
unassigned_transcript_1 other upstream 233495 439054 ~ 439128 (-) True trnag-gcc
XR_006252043.1 other upstream 422141 627700 ~ 627818 (-) True LOC122353666
XR_006252053.1 other upstream 923940 1129499 ~ 1129637 (-) True LOC122353706
XR_006250784.1 other upstream 1389199 1594758 ~ 1604984 (-) False LOC122343438

Expression Profile