RNA id: XM_043240543.1


Basic Information

Item Value
RNA id XM_043240543.1
length 2331
RNA type mRNA
GC content 0.47
exon number 12
gene id fastkd2
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 4960324 ~ 4966920 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

agGCATTTTTAAAGATAACTTAGTGGAAAGCACGTGATACTAGAACTATTGAGAAAGTAATCGTGCGCTCGTTGTTTCTGTCATGGCTGCTGTCAAGCTAGGAGCTGTACGCACGTGAAGACTACAAATGAAGGGTTAATCTTTGTCAGAAGCTTCGGAGGATCTCTCTGTGCCCTGGTGATGATAACATGAGCATGTATAAATCAGGTTTGGACATGCTCAGATGTGCTCTGAGATCCACGCCACGGTGTAAACGTGACTCTTTTATACGGACACACAAGTCTTCATGTTATAAAAGCAGAAGCTTTGCTGTGCCATCTCAGCTGGGCAGAAGCACGCAAGGGCACGCATTAAAACAAGTGCGCTATTACTGGCCGAGCGGAGAAGGATTTCTAAATGAACGAGCCACTGCTTCTCCAGAGACCAGCGATCTCTCAGGTAAAGCGAAAAGGACTCCTTTCTACACACATTTGCAGAATTGCACGTGCCCAACGGACGTGTTGGACACATTGGAGCAGTTCCCAGCGTCGCAGCAGAACGTCAGCAGCGTCTTCTCACGCATGTGGGAGATCTCGAAGACCATGAAGGACGAGCAGCTGCGCTGTGAGCTGCAGCAGATGTTTGAGCACCCGGAGTTTAAGGAGGTCTGCGGACGGGCCATGACCGACGCCTGGCGCATGAGGAGCAGCGATCTGACCTACTGCCTGCTGGCCATCGTCAGCCTGGGAGTTTCACAAAAGACACAGGTTGTCCAGACGCTGCTGCGCGTCATACAGGAGCGGCTGAATACGTTCGATGAAAAGTCTCTTTCAATATTGGCTTCCTGTATTCAAGACATGGAGGACAGCAGGAACGTTCAGGCCCTGAGAGAGGCTTTAagGTTGCTGCTAAAGGATCGTATTCCTGAGATCCAGAGTGTGGTTGTTCTGCAGAGCATGATGCGCGCTGTGGGAAAAAACACTCCGATACATCTGAAGAAGCAGCTGGCGATCAAAGCTCTGTCGTTGGCGGATAAGTTCAGTTCAGCCAACATCCAGTACATGTTCATCAGCCTGGCTGCCATGGAGCTGAACTTCAAACCTCTCCTGGATTTGTGCAGCAAGAGATTATCTGAAAACGTGCATGAATTTTCCTTTTCTACACTTCTTTCGGTACTGAAGTCCTGCAATAAGCTTCACTACAGGAACTACACCCTCTTCTGCTCCATCTCGGACTTCATGGCCAACACGTTTGATATGTGGTCCAACAGAGAGGTGACTCTCTTTCTAGTAATGTTTGAGGATCTCTTGTTCAGACCCGTGGTCCTGTTGGACGCATTTGCAGAGAGAATCATCCAGAAGTCTGAAAGTCTGACCCTGAAGAATCTTCTTTCCGTTTTAAAAGTCTTTTCGCTCCTAAATCACgacctgaaagaaaaaaaaccactGTTTCTGGACTGTGTAACAATGGTCTTGGAGTCCTACCTTCCAAAGATGTCTCCCACGGAACTACTAAAAGCCGTCCACTATCTGGGATTGCTGGAGCATTTCCCCCAAACCTTGCTGGAAAAACTGCTGCAGAAGGGCCCGCTGGACCAGCTCTTAGAGAGAAGCCAACAGTCAGAAAACATCCAGAGGTGGCTGTCCATGTTAGATCTGTGTTTGCGACTGGATAAACCTCAGCTGCCGCCGTCGCCGACCTCTCTTCCAGACCTGCACTTCTCACGGCCTGCTCTTACGGTCACGGCCAACAGTGACGTGCAGAGTGCGGTCAGGAGCATCGTGGGAAATGATGCCGTTCAGGACAGTGTGCTGGAGCAGGGCATTTATTTCATTGATTGTGTGATTACGCTGCCTCGTCAGACAGAAGAAGCCCGTGGCCTCAATGCAGAGGATTCTGGGTCACCTCAGTCTGCCCAAAGGATCGCGGTGGTCTGCACCACCCATAATTCATTTTGCTTTGGCACAACGCATCCTCGAGGCAGCTTGGTTATTAAACTTCGCCATCTTGAAAAACTTGGTTATAAACCTGTTTTGGTTCCTGTCTTTGAGCTCAGCTCTAAAACTGAGGAAGAGAAGattaaaatgctacaaaagcTAATTTTTCCAGAACAGGAATCCGGCGCTACACAGGAAATACCACACGATAGTCCAAAAAATGAGTAAAATccactgtgttttatttcccCTCGTGTACTGGGGACATTTTGATCTTAGTCTGAGATGGAAATATGATGCATACTATTTATTGATGTATAATATCAATACTGTACTGCTTTGTGCTCTTCCTCCAACGCCGACAGATTgaaatcaatgtaaaaataaacatgaagtgattttttttatatcaaaa

Function

GO: NA

KEGG:

id description
K18190 FASTKD2; FAST kinase domain-containing protein 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1377 lncRNA upstream 15490 4938219 ~ 4944834 (+) False prkag3a
XR_006251100.1 lncRNA upstream 41529 4896796 ~ 4918795 (+) True LOC122346140
TU1369 lncRNA upstream 41960 4918028 ~ 4918364 (+) False LOC122346140
XR_006251098.1 lncRNA upstream 45797 4896796 ~ 4914527 (+) False LOC122346140
TU1364 lncRNA upstream 45902 4896504 ~ 4914422 (+) False LOC122346140
TU1368 lncRNA downstream 10502 4977422 ~ 4977914 (+) True G948
TU1469 lncRNA downstream 12205 4979125 ~ 4996767 (+) False hecw2b
TU1470 lncRNA downstream 12205 4979125 ~ 4996767 (+) False hecw2b
TU1468 lncRNA downstream 12233 4979153 ~ 4996767 (+) False hecw2b
TU1485 lncRNA downstream 71800 5038720 ~ 5101322 (+) True G1016
XM_043240572.1 mRNA upstream 5281 4945839 ~ 4955043 (+) True retreg2
XM_043240580.1 mRNA upstream 5281 4945842 ~ 4955043 (+) False retreg2
XM_043240678.1 mRNA upstream 15483 4938183 ~ 4944841 (+) False prkag3a
XM_043240687.1 mRNA upstream 16588 4938181 ~ 4943736 (+) False prkag3a
XM_043240694.1 mRNA upstream 16588 4938181 ~ 4943736 (+) False prkag3a
XM_043240480.1 mRNA downstream 266 4967186 ~ 4977263 (+) True gtf3c3
XM_043240488.1 mRNA downstream 266 4967186 ~ 4977263 (+) False gtf3c3
XM_043240506.1 mRNA downstream 304 4967224 ~ 4977263 (+) False gtf3c3
XM_043240496.1 mRNA downstream 396 4967316 ~ 4977263 (+) False gtf3c3
XM_043240514.1 mRNA downstream 1927 4968847 ~ 4977263 (+) False gtf3c3
XR_006251076.1 other upstream 15483 4938183 ~ 4944841 (+) True prkag3a
TU1199 other upstream 602028 4358007 ~ 4358296 (+) True G826
TU1197 other upstream 603064 4356698 ~ 4357260 (+) True G824
TU1118 other upstream 1261231 3636707 ~ 3699093 (+) True G749
TU1095 other upstream 1619448 3334658 ~ 3340876 (+) True G727
XR_006251062.1 other downstream 266 4967186 ~ 4976846 (+) False gtf3c3
TU1696 other downstream 912540 5879460 ~ 5881134 (+) True G1168
TU1714 other downstream 1090484 6057404 ~ 6087655 (+) True G1183
TU1931 other downstream 1318938 6285858 ~ 6287198 (+) True G1318
TU2062 other downstream 1566582 6533502 ~ 6536957 (+) True G1414

Expression Profile