RNA id: XM_043240580.1


Basic Information

Item Value
RNA id XM_043240580.1
length 4132
RNA type mRNA
GC content 0.45
exon number 9
gene id retreg2
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 4945839 ~ 4955043 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

aTAATCCATGACGAGCCTCTCCTGACCGAACCCCgtcatcaacacacacacacacacacaaacaacgcTGGACGAGTGAGAATGGCGAGCAGACGGGCCTCGGAGTCCTCGGCCTCGGCCGGTCTGGAGGCCTGGTTCCCCGCGCCCGGCGGCTGCGGCGAGGATGCGCCGGAGCTGCGGCGGCTGCGGGAGCGTCTGCGCGGCTGGCTGTCGCAGTGTGAGCCCGCGGTGCTCTGCGCGCAGCGGCTGCTGGTGTGGGAGAGGCCGCTGCACAGCGTCGTCGCCGCGCTGGCGCTCAACACGCTGTTCTGgctCCTGTCGTCCACGTCTTTGAGACCCTTGTTCCTCCTGAGCGTGTCTCTCATCGGACTGACTTTACTGGAGAGATGGAAAGACAAGCTGCCACAGATCACAGCGTGGCATCCCGAGACGGCTGTCATTGAGCGAGAAGCTCTGAGCGATCAGCCGCGTCTGTTAAGCGTGGAGGAGCTCAGCCATCATCTCGCCGAGAGTTACCTCACCTTCAGCCTTTACATCCAAGAAATGCTTCAGTACAAACGACAAAACCACGGCAAGTTCTGCATCATGATGTGTTCGGGATGTTTCCTCCTGGCCGTGGTTGGACATTACATTCCCGGGATAATGATCTCCTACATCATACTGCTGAGTGTGCTGCTGTGGCCGCTGGTGGTTTACCACGAACTGATCCAGAAAATGTACACCGGACTGGAGCCCATACTGATGAAACTGGACTACAGCATGAAAGGAGACACACAGCGCCGCAAATATGACAAGAGAAagcTGAAGAAGGAGCAGGAAGAGGGTGATGAGCCAAGGGCAGAGACCGAGAGCGAGAGCGAGGAGGAGCTGTCATGTTTCGCCCCTACTGTGGATGTGAAGACTACGGCTCTGGCGATGGCCATCACAGACTCGGAGCTGTCTGATGAGGAGGCTTCTATACTGGAGAGCGGAGGATTCTCTGTGTCCAGAGCCACAACACCACAACTCACAGACGTCTCGGAAGACCTGGATCAGCAGAGCGTGCACAGCGAGCCGGAGGAGGCGTTCTCTAGAGACCTAGCAGAGTTCCCGTCGGTGGACGAGCTGCCTTCTATTGAGCCGGGTCTGTTCCATTTCCCGCTGGGCGTCCTCGGGTCAGAGCAGACGGGAGCGTCCGGACCCGGGCTCCAGGAGGAGGCGTTGTCTCCGGCCGGCCTCCTCATCCAGCACTTAGCGTCTCCGCTCCACTTCGTCAACACGCACTTCAACGGACACGGACAGGCGGCAGTGGCGGACCAAAGCATCGTGGGTACTGAAAAAGAGGGAGGGGGATTGGCTGCGGGCGTTTCGAGACCCGCTCGGTCCCTGGAAGCCCTCAGCGAGGAGATAGTGAGCACGGCCATCTCTACTGTAGTACAGAACACTCTCTCAGCCCTGTTGCGGTCTAGCGAGGCCAGCGAGGGCTCGTCACTGGCTTCGTTTCTTCCCACCGAAACGCTTCCATGCCTGATGGAATCGCCCCTCGAGTCGCCTTCAATCCAGGAAGCCGGCGCCGAAGAAGAGGACGCGGACGTCACCGAAGCGAGCACCGAAGAGCAACCGGATGTCACGCTCGTACCGGCCGAGGAAGAGGACTTTGAGCTTCTGGACCAAAGCGAACTGGAACAAATGGATGAGGGGTCGGGCTTCGGTGGTGATGGACAGGAAGTGGGCGGGGCTTCCACAGACACACCCCCAAGCAGTCAGCAGCACGCAGACCAGCAGGATTCCTAGCTTCACATCAtctaaactgtttattttatttatagtccTTGTAGATACAATATACTGACACAAATGATTCGTGAAAGGGAATGCTGCGGTCAGCTATGCCTTTATTTTGTGGTTTTCAGGAGTGAGATCACTGTGATTGGCGGTTAGCTTTCATTTCCTTTTGAGCAGGTGAATGTCCAAAACGTAAAACATTCAACCGAAATCCTTAAAGCGACAgtaatgagttttttttgttttgtttttttgacagaTCCAAATGGCCTTCAGCCTCAAATCCAGCCACTCAGATTTCAATAGGCttagttttaatcatttactgtatgtatattttgaCAAAGACTACATGTCTGCGACACGTGCCCTCTGGTTTATCAATCCCGCGCTGACCGTTGTCACGAGGTTTAATGCATCAGGTCAAGGGAAGACGTTAGGTGGGctgacttttgtttgtttgtagggCTGGGAGGTTTTATGAGCAGGATATGGCTGCAGATTCTCGGTCACGTTAAAGATTTCCTTTCATAATCATAGCTTAACTAATATATTCCTATGAAGCGGATGGTTTCATTTATTCAAACTGGTTAGAGTGAAGAAAAGCTTACCATTTAAATACGTTtcgaataaataataaaagctgcAACATTTATATTCCGGCAGACAGACGTTAAAGAAGTTTAGCACATTGCAAATCAAatactgaaaatcatttttgagaGATCAATATTGGATTGTGCCATTTACTGATTTTTGAGGATGTAAAAAGTACTTTTGTCGCACAAAGGTGATTGTGAATGCAGCGTAGCACAGAAGAGTTCCTCATTGATAGTGCTTGATTCCAACCCCCCCccatatttatgtaaaaattagaAGTTTAACTCATATTCAGGCTCAATATATTATAATTGGTTGCACTTTTGAAGTATTGTTTGCGTGCACATTCGCAGGACTTCTGGATTTTCATAAACATGCCAAAAATACTGCTGATCAagagtttggggtcagtaagatttattattgtttatttttttaatttatttttatttttttaaaaggaatgaATACTTTTAATGCAGAAAGAATTGgaataaaattgattaaaagttttATCTTTCAAATTAATGCTGTCCTTTTGAACTTTTCTAGTCAAAAAGTTGACTAGAAGGTTTCCACAAATTATGAAGCGgcacaaaaaaaagcagtaattatacaaattgtaatgatttctgaaggatcatgtgacactgtagactggagtaatgatgcagaaaattcagctttgcatcacaggaagtAGAAGTAGAAAACATCAAATAATTTGATAGAATAAGTACAGTTTGGGAGAGTATAAAAATCCTACAGACTCTGAACTCTTGAACGTCTCATTGTATAAATCCCATCAAGAGCTCACAGATTgcctaaaatataatttacatgaaAAGCTGTATGACGTTTGGGTAGATTTCCTGCATGGGCTTGACTGAATTATCTTCccttgtttaattaaaatgaagggGAAACCTTAGTGAATGATTGAGCCTTATTTGTATCTTTGTGAGATGCTCGCAATAAGTCATCGAGGTATTTCTAGAATTGATCACATGAACCTCTAACAGCatattaagaatattaattTCTCTTCATGTCAGTGTCAAAGGTCTCAGTGACTTCTGtgacactggaaaaaaaattgtaagattgtataattcaatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattccaattCTTAATCATACTAAAGGGAAATATCTTTTAAACTGGAATTGTGTATGAAAAaaccatgtatatatttgacgTTTAACAGATCTGTTGATCGATTGGAGGCAGGTTGACATcctttaaaattctaaattcttACACTGTCCTAACcagtcattttaattcaaattttgtTAGCCCCACCCACTGTAAAATCTGATTGGTCTAAAATCCCGCGCCACGTGTAGTCCAGAACATGTTCTGCGTTGCtgtgattgtatttttaatttcagtgtgGAAAAACCGCTTGTCGCATCTCAGTTGTTTTTGTTAGGACTTTGCGTTTTGCCCTTTCTCCTGTAGATATAGCCACAGACTCATCTGATCCAGACCGCAGAGATTTGTGTTTTCAGATATTTACAGAGAGGTTATCTTTGTGTAATAGTGATTGTGTTTTGCTCATGCTGTTACTGCTTTAtgatctataaaaaaaaagcacttagaGCATTTAActacaaaatgtattgttgaatgttattttgttaCTCTGACTTGCACCTCCATGTATCTCTAATATACACCCATAAGCTGGTTTTCAACTTCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1377 lncRNA upstream 1008 4938219 ~ 4944834 (+) False prkag3a
XR_006251100.1 lncRNA upstream 27047 4896796 ~ 4918795 (+) True LOC122346140
TU1369 lncRNA upstream 27478 4918028 ~ 4918364 (+) False LOC122346140
XR_006251098.1 lncRNA upstream 31315 4896796 ~ 4914527 (+) False LOC122346140
TU1364 lncRNA upstream 31420 4896504 ~ 4914422 (+) False LOC122346140
TU1368 lncRNA downstream 22379 4977422 ~ 4977914 (+) True G948
TU1469 lncRNA downstream 24082 4979125 ~ 4996767 (+) False hecw2b
TU1470 lncRNA downstream 24082 4979125 ~ 4996767 (+) False hecw2b
TU1468 lncRNA downstream 24110 4979153 ~ 4996767 (+) False hecw2b
TU1485 lncRNA downstream 83677 5038720 ~ 5101322 (+) True G1016
XM_043240678.1 mRNA upstream 1001 4938183 ~ 4944841 (+) False prkag3a
XM_043240687.1 mRNA upstream 2106 4938181 ~ 4943736 (+) False prkag3a
XM_043240694.1 mRNA upstream 2106 4938181 ~ 4943736 (+) False prkag3a
XM_043240655.1 mRNA upstream 2110 4938183 ~ 4943732 (+) False prkag3a
XM_043240669.1 mRNA upstream 2110 4938183 ~ 4943732 (+) False prkag3a
XM_043240543.1 mRNA downstream 5281 4960324 ~ 4966920 (+) True fastkd2
XM_043240480.1 mRNA downstream 12143 4967186 ~ 4977263 (+) True gtf3c3
XM_043240488.1 mRNA downstream 12143 4967186 ~ 4977263 (+) False gtf3c3
XM_043240506.1 mRNA downstream 12181 4967224 ~ 4977263 (+) False gtf3c3
XM_043240496.1 mRNA downstream 12273 4967316 ~ 4977263 (+) False gtf3c3
XR_006251076.1 other upstream 1001 4938183 ~ 4944841 (+) True prkag3a
TU1199 other upstream 587546 4358007 ~ 4358296 (+) True G826
TU1197 other upstream 588582 4356698 ~ 4357260 (+) True G824
TU1118 other upstream 1246749 3636707 ~ 3699093 (+) True G749
TU1095 other upstream 1604966 3334658 ~ 3340876 (+) True G727
XR_006251062.1 other downstream 12143 4967186 ~ 4976846 (+) False gtf3c3
TU1696 other downstream 924417 5879460 ~ 5881134 (+) True G1168
TU1714 other downstream 1102361 6057404 ~ 6087655 (+) True G1183
TU1931 other downstream 1330815 6285858 ~ 6287198 (+) True G1318
TU2062 other downstream 1578459 6533502 ~ 6536957 (+) True G1414

Expression Profile