RNA id: XM_043240593.1


Basic Information

Item Value
RNA id XM_043240593.1
length 1559
RNA type mRNA
GC content 0.56
exon number 4
gene id tuba8l2
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 4548452 ~ 4554686 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCTGTGCTGCTGTAGGTATAAAATCAAACTCCTGTCAGTGAGACGGTGAGACTGTCTCACTCATACCCCATTGCAGGTACGCAGTGAGAGGGCTGAAGGGATCTTCAGACTATTTTCCTGGCAAAAATCCCGATTCCAAAGCAAAATGCGTGAGTGCATCTCTGTCCACGTCGGCCAGGCCGGCGTCCAGATGGGGAACACCTGCTGGGAGCTGTACTGTCTAGAACACGGTATCCAGCCCGACGGCCAGATGCCCAGCCACAAACCAGTGGGCGGCCATGATGACTCCTTCACTACCTTCTTCAGTGAGACTGGAGCTGGCAAATACGTGCCACGTGCCATCTTTGTAGACCTTGAGCCAACTGTCATTGACGAGGTCCGCACAGGCACCTATCGTCAGCTGTTTCATCCCGAGCAGCTCATTTCAGGCAAAGAGGATGCAGCGAATAACTACGCCCGTGGGCACTACACCATCGGCAAGGAGATCATTGACTCCGTACTGGACCGCATACGCAAACTGGCTGACCAGTGCACAGGGCTGCAAGGTTTCCTGGTCTTCCACAGCTTCGGTGGAGGCACGGGCTCAGGCTTCACCTCCCTTCTGATGGAGCGCCTCTCTGTCGACTTCGGGAAGAAGTCCAAGCTGGAGTTTGCCATTTATCCGGCTCCACAGGTGTCTACGGCCGTGGTGGAGCCGTACAACTCCATCCTGACCACTCACACCACCCTGGAGCACTCCGACTGTGCCTTCATGGTGGACAACGAGGCCATCTACGACATCTGCAGGAGGAACCTGGACATCGAGCGCCCGTCCTACACCAACCTCAACCGGCTCATCAGCCAGATCGTTTCCTCCATCACCGCCTCTCTGCGCTTCGACGGCGCCTTGAACGTCGACTTGACGGAGTTCCAGACCAACCTGGTGCCCTACCCTCGTATCCACTTCCCCCTGGCCACGTACGCTCCGGTCATCTCCGCCGAGAAGGCCTACCACGAGCAGCTCTCGGTGGCTGAGATCACCAACTCGTGTTTCGAGCCCAGCAACCAGATGGTGAAGTGCGATCCTCGGCACGGGAAGTACATGGCCTGCTGTTTGCTGTACAGGGGGGACGTGGTGCCAAAAGACGTCAACGTCGCCATCGCAGCCATCAAGACCAAAAGAAGCATCCAGTTTGTGGACTGGTGTCCCACCGGCTTCAAGGTGGGCATCAACTATCAGCCCCCGACGGTGGTTCCCGGAGGAGACCTGGCCAAGGTGCAGCGAGCCGTGTGCATGCTGAGCAACACCACGGCCATCGCTGAGGCCTGGGCTCGCCTGGACCACAAGTTTGACCTGATGTATGCCAAGAGAGCCTTCGTGCACTGGTACGTGGGAGAAGGCATGGAAGAGGGAGAGTTCTCTGAGGCCAGAGAAGACATGGCAGCTCTGGAGAAGGATTACGAAGAAGTGGGCATCGATTCATTtgaagaggatgaggaggggGAAGAGTTCTAAAGGGAaagtgttgttcttttttttttctaccaaataaaaagccaaataaaagaaagattttaa

Function

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
K07374 TUBA; tubulin alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1227 lncRNA upstream 5504 4540990 ~ 4542948 (+) True G852
TU1232 lncRNA upstream 44631 4503532 ~ 4503821 (+) True G857
TU1231 lncRNA upstream 45975 4502241 ~ 4502477 (+) True G856
TU1185 lncRNA upstream 249254 4294053 ~ 4299198 (+) True G815
TU1187 lncRNA upstream 249254 4294053 ~ 4299198 (+) False G815
TU1218 lncRNA downstream 21458 4576144 ~ 4599814 (+) True G843
TU1222 lncRNA downstream 53845 4608531 ~ 4609874 (+) True G847
TU1244 lncRNA downstream 58886 4613572 ~ 4614130 (+) True G869
TU1246 lncRNA downstream 60132 4614818 ~ 4615402 (+) True G870
TU1249 lncRNA downstream 61432 4616118 ~ 4616939 (+) True G872
XM_043240733.1 mRNA upstream 49213 4495194 ~ 4499239 (+) True spry2
XM_043236152.1 mRNA upstream 315949 4221283 ~ 4232503 (+) True LOC122342374
XM_043249780.1 mRNA upstream 537082 4007775 ~ 4011370 (+) True LOC122352357
XM_043251222.1 mRNA upstream 730456 3804599 ~ 3817996 (+) True slitrk6
XM_043246568.1 mRNA upstream 1427632 2941770 ~ 3120820 (+) True LOC122350229
XM_043240746.1 mRNA downstream 819 4555505 ~ 4561710 (+) False stk16
XM_043240754.1 mRNA downstream 921 4555607 ~ 4561710 (+) True stk16
XM_043240557.1 mRNA downstream 35345 4590031 ~ 4597077 (+) True atic
XM_043240618.1 mRNA downstream 90248 4644934 ~ 4649367 (+) True LOC122346000
XM_043240644.1 mRNA downstream 97946 4652632 ~ 4657892 (+) True LOC122346016
TU1199 other upstream 190156 4358007 ~ 4358296 (+) True G826
TU1197 other upstream 191192 4356698 ~ 4357260 (+) True G824
TU1118 other upstream 849359 3636707 ~ 3699093 (+) True G749
TU1095 other upstream 1207576 3334658 ~ 3340876 (+) True G727
XR_006252051.1 other upstream 1806240 2742079 ~ 2742212 (+) True LOC122353699
XR_006251076.1 other downstream 383497 4938183 ~ 4944841 (+) True prkag3a
XR_006251062.1 other downstream 412500 4967186 ~ 4976846 (+) False gtf3c3
TU1696 other downstream 1324774 5879460 ~ 5881134 (+) True G1168
TU1714 other downstream 1502718 6057404 ~ 6087655 (+) True G1183
TU1931 other downstream 1731172 6285858 ~ 6287198 (+) True G1318

Expression Profile