RNA id: XM_043240711.1


Basic Information

Item Value
RNA id XM_043240711.1
length 1615
RNA type mRNA
GC content 0.50
exon number 3
gene id mnx2b
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 4569834 ~ 4574420 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TACACTTCTAAACAAAACAgcgcctatatatatatatttatagtttgatAAAGCGCTCGTATTCTTTCCGGGagcgttttatttttctgcgTAAAAGGTTTTGATATAGGCTGCTTGAATTACTCTGTACGTCTCACCGTTCCTAATGGGTAAATATCAGTCAGACTCACtctaaatatctattttattagaAGGGGAAATATAAGTAATCGCGATTAATACGCATGCATCTGTGCGTAAAACGCGGCTATCCGAGTGTCTCCCCGCGCAGTTCGTAACACCCCAAAAGCGTCGCAATGGAAAAATCAAAGAACTTCAGGATCGACGCGCTTCTGGCTGAAGAACCACACCGAGGGAGCCGAGAAGTGTCGCCTGGACTGAGCAGCGACAGCCCGACGGGGAGCCCGGTGTCCTGCAGGCGCGCAGACACTCCGTCCCCGCGCGGGACCCCTGGTGCCATACACCTCCAAACCGGAATCATACCCAAACCAGGGCTGCTCAATCTCCCACACCCAGGACTCACTTCGCTTCCAGGCATGTACACGACGCCCATGTACCCCATTTCAGCTTTGGGAGGTCAGCACCCTGCCCTGGCGTACTCGGGTTTTACGCAGCTGACGCAGCCGTACCCGGAGCAGCTGAAGGCGGCGGCGATGGCCGGGTCTTTACCGCTGGAGCACTGGATACGAGCCGGCATCATGGTACCACGACTGCCCGATTACACCTCAGCCCCCCAGTCCGGTCTGATGGGTAAATGTCGTAGGCCGAGGACGGCGTTTACCAGTCAACAGCTACTGGAGCTGGAAAACCAGTTTAAACTTAACAAGTACCTTTCCAGACCAAAGCGCTTCGAAGTGGCCACATCGCTCATGCTGACTGAGACACAGGTCAAGATCTGGTTCCAGAACCGGCGAATGAAGTGGAAACGCAGCCGTAAGGCTAAAGAACAGGCCGCGCAGGTCGAGGTCGAGCGTCAACGCGGCGGAACCAAATCGACCAATGAGAGGCCGGGGAGAGACGGCCGCAGGGCCATCGCTCAGAGTGTGGAGGAGCACGAGGAGGACGACGATcttgaggaggaggaggaggaagaggaggaggaagaggaagggcAACACAAATTCGTAAACGACAACCTCAACGTAACACGTTCCACAGACTTTCTGCACCATGCGTCTGCGTTAAGATACCACCCCGACAGCCCGTTCTCTGACGACGACATGGAGGAGGTGGGAGGAGCCGACAGGAAGATCGGGGCGGGGTTATGAAAAGATATTTATATGGAACAGTGCAACAATATGCAACGATAAAGTTAAAGAACAGAGACTGCAAATGCCAAACTATTTAGCCACGCAAAAAGCCAGAATAAATTTCACAGATATGTGATGGTGTTGGTAAGTACAGGTGCCGATGAAACTCATACAGAGTAAACATTAAATGTAGTAATAAACGTTCAAGCTGTGTTCAAAAACTTGAAGACAGCAAAGGCCATCACAgatcctctctttctctctctacacatgcatacactactgttcaaaagtttggggttattaagattttttatttagcaaggatgtattaaattcaaattaaattggattgtttaactgtt

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0021520 spinal cord motor neuron cell fate specification biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1292 lncRNA downstream 12336 4556369 ~ 4557498 (-) True G889
TU1289 lncRNA downstream 16562 4551569 ~ 4553272 (-) True G888
TU1285 lncRNA downstream 58449 4510794 ~ 4511385 (-) True G885
TU1283 lncRNA downstream 63275 4506278 ~ 4506559 (-) True G883
TU1280 lncRNA downstream 69046 4500557 ~ 4500788 (-) True G880
XR_006251101.1 lncRNA upstream 44826 4619246 ~ 4623921 (-) True LOC122346147
TU1304 lncRNA upstream 45920 4620340 ~ 4620866 (-) True G899
TU1385 lncRNA upstream 173070 4747490 ~ 4748885 (-) True G959
XR_006251107.1 lncRNA upstream 286581 4861001 ~ 4862965 (-) True LOC122346181
TU1402 lncRNA upstream 354944 4929364 ~ 4930701 (-) True G973
XM_043240772.1 mRNA downstream 23368 4531789 ~ 4546466 (-) True ndfip2
XM_043251462.1 mRNA downstream 868589 3695165 ~ 3701245 (-) False LOC122353624
XM_043251470.1 mRNA downstream 868589 3695165 ~ 3701245 (-) True LOC122353624
XM_043251495.1 mRNA downstream 1285048 3202552 ~ 3284786 (-) False gpc5a
XM_043251484.1 mRNA downstream 1285054 3136508 ~ 3284780 (-) True gpc5a
XM_043240393.1 mRNA upstream 22660 4597080 ~ 4618627 (-) True fn1b
XM_043240404.1 mRNA upstream 22660 4597080 ~ 4618626 (-) False fn1b
XM_043240460.1 mRNA upstream 99269 4673689 ~ 4739459 (-) False nrp2a
XM_043240468.1 mRNA upstream 103375 4677795 ~ 4739460 (-) True nrp2a
XM_043240448.1 mRNA upstream 190879 4765299 ~ 4896900 (-) False pard3ba
TU1193 other downstream 270641 4298310 ~ 4299193 (-) True G820
TU1152 other downstream 555547 4007840 ~ 4014287 (-) True G782
TU999 other downstream 1880370 2688765 ~ 2689464 (-) True G654
XR_006250784.1 other downstream 2964850 1594758 ~ 1604984 (-) False LOC122343438
XR_006252053.1 other downstream 3440197 1129499 ~ 1129637 (-) True LOC122353706
XR_006252050.1 other upstream 1203151 5777571 ~ 5777657 (-) True LOC122353693
XR_006251180.1 other upstream 1271656 5846076 ~ 5853244 (-) False LOC122346875
TU1845 other upstream 1537043 6111463 ~ 6113523 (-) True G1270
XR_006251170.1 other upstream 1693243 6267663 ~ 6274751 (-) False si:ch211-14k19.8
XR_006251174.1 other upstream 1883631 6458051 ~ 6468254 (-) False gaa2

Expression Profile