RNA id: XM_043240772.1


Basic Information

Item Value
RNA id XM_043240772.1
length 2038
RNA type mRNA
GC content 0.47
exon number 8
gene id ndfip2
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 4531789 ~ 4546466 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCGCCCACTCGCTTTGTTTCTCGCTGTAGGACGTGACTGTATCTGCGCGAGCGTTCGCTTTAAATCATGGCTATTGTGTAAATGGGGAAAAACTAGCGTCTCCGCGTATGACTGATCCGTGCCGTACGATCTCGGGTAAGGTCGAGGGCTGCCTCTAATTTGAATTAACCCAGGATTTTAAGGTTTTATTCGCCGCTGGCTGGGCTGGCCGTATATGAAAATGGACCAGGCGGCGAGCCGCTACCAAGTGTTGCACAATGAGGACGAATCCTCCGAAGGGGCCGCCGGCCCGGAGCCGTCCACATCCTCCCAGGCCTGTGCCGCCGTTGCAGGCATCAGCAACCCTGCGGTGGAAACGGaagctccgcctcctccttacaccAGCGTGGCGCTCGGAGCAACAGCTGCACCAGAGAGCACATTTCCGGGGGACTTTCCCGTTCCTCCACCATACAGCGTCGCCACATCTCTGCCCACTTACGATGAGGCAGAGAAGGCCAAAGCGGCAGCCATGGCCGCCTCGGCGGTGGAGGTCATTCCACGAGATGATGATTTTCCGGTTCGGGATGACTTCAGCGATGCTGATCAGCTGAGGGTGGGGAACGATGGAATCTTCATGCTGGCCTTTTTCATGGCGTTTCTGTTCAACTGGATCGGGTTTTGCTTGTCTTTCTGTTTGACCAACACCATTGCTGGCCGATACGGTGCCATCTGTGGCTTTGGCCTCTCTCTCATCAAATGGATCCTCATCGTTAGGttttcagATTACTTCACTGGATACTTCAACGGGCAGTACTGGCTCTGGTGGATTTTCCTTGTTCTCgGGctcctgctgttcttcagaggGTTCGTGAACTACCTGAAAGTGCGTAACATGTCAGAAAACATGGTGTCTTCGCTCCGAACCCGCTTCTTCCTCCTGTACTAGAGGTCGCCTCACCAAAACATTCCTTCCTAATGTGAAATTCCTTGATGATTTGCAACCCGTCAAATGAACTGGACTGGATCCCACCGAGGGGAAggggaagaagagagagagaagaaaaaaaaatcaaacgagaatctctgccaaacgttctcAGCTCAACCGGGTAGAAGCGGAAGGTTTTTCCGCGCTCTGGACGAGTGCAAATCGGCTCTTAATATCCCCGTTTTCACATCGTCCCGGTTGGCCCGAGCCCATAAACTGATTGCtagatttgaaaaaaacaacaggaaaaagtCCCTTTGCTGTTAATCTTTTCACACGCTGCATGCGGAGCGATGGACCTGTGTACTTgggtcaggaaaaaaaaaccgcAGAAGGTCTCTAGAAATATGCAGCCAAGACATCCTATGCAATGTCTTTCACCAAACCGGGTTAGCGGTCTTAGACGGATGAAACTAGACTAGTTCAATTCTCTTTGCTTCGTTGCATCCAAGGCCTTGGCAAATTTGATTGCATTGCAGTATTAATACACCAAGTTTAGATAGAATTTGATGCTAACTTTAGCTAACGGCGACGTAAAAGTACAGCCGCACAGTTTCTCTTCTTCTTAAGTTGTGTCTCGCTTAACTTTATAGTAAATGATTAAGAAACTTCATCGATGTGTTTCAAACTGGAAACGGAATTTGTACTTAtcctgaaatatatatttgccttttgcaccttcattttttttcctgttttttatGGTTATTGGTCGTTTTAAGTTGCGACTTCGCTCAAGCTGTGACCTGCCTAGATGACTTTAGTTACTTGAATGCCTGAATGCAACTGTCATTCGTTTCTATTAATCACGAGCCTCTTTAGCAATATcggatattaaaataaatgcatggttAACTCGGTTGCAGCAGTTTAAACGACTAAtccagtaaacaaaaaaaacctaagggaaaaaaaaaaggcaacttacatttattaaatgtatgtaaaacaaCCAACCAACTTTTGTTGGAATAATGATTTTGGATTTTCTCTGATTGGCAGAGATGATTGTGTGCTATGTTTATTCTCTTGTCTTGCATAATGCCAATAAAATTTGAGCTCCCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1285 lncRNA downstream 20404 4510794 ~ 4511385 (-) True G885
TU1283 lncRNA downstream 25230 4506278 ~ 4506559 (-) True G883
TU1280 lncRNA downstream 31001 4500557 ~ 4500788 (-) True G880
XR_006251102.1 lncRNA downstream 77609 4446059 ~ 4454180 (-) True LOC122346152
TU1173 lncRNA downstream 493819 4037738 ~ 4037970 (-) True G803
TU1289 lncRNA upstream 5103 4551569 ~ 4553272 (-) True G888
TU1292 lncRNA upstream 9903 4556369 ~ 4557498 (-) True G889
XR_006251101.1 lncRNA upstream 72780 4619246 ~ 4623921 (-) True LOC122346147
TU1304 lncRNA upstream 73874 4620340 ~ 4620866 (-) True G899
TU1385 lncRNA upstream 201024 4747490 ~ 4748885 (-) True G959
XM_043251462.1 mRNA downstream 830544 3695165 ~ 3701245 (-) False LOC122353624
XM_043251470.1 mRNA downstream 830544 3695165 ~ 3701245 (-) True LOC122353624
XM_043251495.1 mRNA downstream 1247003 3202552 ~ 3284786 (-) False gpc5a
XM_043251484.1 mRNA downstream 1247009 3136508 ~ 3284780 (-) True gpc5a
XM_043235137.1 mRNA downstream 1792200 2732846 ~ 2739589 (-) True cep97
XM_043240711.1 mRNA upstream 23368 4569834 ~ 4574420 (-) False mnx2b
XM_043240702.1 mRNA upstream 23368 4569834 ~ 4574420 (-) True mnx2b
XM_043240393.1 mRNA upstream 50614 4597080 ~ 4618627 (-) True fn1b
XM_043240404.1 mRNA upstream 50614 4597080 ~ 4618626 (-) False fn1b
XM_043240460.1 mRNA upstream 127223 4673689 ~ 4739459 (-) False nrp2a
TU1193 other downstream 232596 4298310 ~ 4299193 (-) True G820
TU1152 other downstream 517502 4007840 ~ 4014287 (-) True G782
TU999 other downstream 1842325 2688765 ~ 2689464 (-) True G654
XR_006250784.1 other downstream 2926805 1594758 ~ 1604984 (-) False LOC122343438
XR_006252053.1 other downstream 3402152 1129499 ~ 1129637 (-) True LOC122353706
XR_006252050.1 other upstream 1231105 5777571 ~ 5777657 (-) True LOC122353693
XR_006251180.1 other upstream 1299610 5846076 ~ 5853244 (-) False LOC122346875
TU1845 other upstream 1564997 6111463 ~ 6113523 (-) True G1270
XR_006251170.1 other upstream 1721197 6267663 ~ 6274751 (-) False si:ch211-14k19.8
XR_006251174.1 other upstream 1911585 6458051 ~ 6468254 (-) False gaa2

Expression Profile