RNA id: XM_043241388.1


Basic Information

Item Value
RNA id XM_043241388.1
length 1542
RNA type mRNA
GC content 0.39
exon number 3
gene id ccr9b
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 404682 ~ 408086 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCAATGTGGGAAGCTTATTCATCACTGAACTGTTGTTAAACTTTTGGTTATCTGTTGTGACTCTCCTGAACATGGGTGTATTTACAACTTCAGGCTatgacATTGGTACTTTTAATTTCACAGATTTGTCAGACTTGactaCTGATACTGATGACTATGAATCAGACTTGGGTGGATTATGTAACAAAGAGTTGGTGCGACAGTTCAGTAAGACCTTTGAGCCCACTCTCTACTGGATTATCTTTGTCGTGGGGGCTTTGGGTAACCTACTGGTTGTCTGTATCTTCACAACTGTGCGAAACCGCCTCAAGACCATGACTGATGTGTACCTTCTGAACCTGGCAGTGGCTGATCTTCTTTTCCTAGGCACATTGCCCTTCTGGGCAACAAATGCTGCTCAGGGCTGGGTGTTCAGCCAGGCCATTTGCAAAGGAATTTCTGCAGTCTACAAGATCAACTTCTTCTCTAGCATGCTCTTACTCACCTGCATTAGTGTAGACCGCTACATTGCCATCGTTCATGTAACTGAAGCTCacaactacaaaaacaaacgAATGCTATATAGTAAGATaacgtgtgtttttgtgtggcTCGCATCTTGCCTCTTAGCTCTACCAGAATTTCTCTTTGCCAATGTGAAAAACATTGACCCACATGGCACTTCCTGTGTTATGGTATATTCAATCACAGACAACAATCGTACCAAAGTCTTGGTATTGGCTTTACAGATCAGTGTTGGCTTCATACTCCCATTACTTGTCATTGTATTGTGTTACTCAGTCATTATTCGTAAACTCATGCAGGCTCGAAGCTTTGAAAAACACAAGGCTTTAAGAGTCATCTTTGCAGTTGTGGCTGCTTTTGTTCTCTCACAGTTGCCATTCAGTGGATATCTAATTATACAAGCAGGCCAAGCCAACAACGCTACAATAACAAACTGTGAAGTCATGCAAAGCTTAGACATGGCTGGGCAAATTGTGAAGTGTCTTGCATACACACATTGCTGTCTGAATCCCATCctgtatgtatttattggtGTTCGCTTTCGGAAGGATCTCTTCAGCCTGCTTCAGCGCATGTCCTGTGGCATGGGACTGGTCAACAATAGCAAACTGCAACAAGTTCCCAAGAGGCCCTCTATTATGTCTGACACTGACACCACCcctgttttttctttatagaCACCAGTATACAGTTTTGACATCCTTTTAATCCTTTTTGTCATGGTTATAGGCCATGTTTGGGCAAAGCCTTTGAAATGTGCTTTATGATAGTATTATTCTTGCATAGTTCTCTGTCTGTAAATGATGGCAGATAGTGGAGGCATAGACtttgtacattttgcattttgcattttgtacaTTCTGTTCTTGAGCATTTAACCACAATTTTGGCATGGATGATTGCAGTTAGagcaatgttacaaaaaatgttgtaaagtgtaaatagatgttaaaaatgtagaacttattaaatgtaataaattttattttgatttaattttgtattataaataaagtgattttttttcataaaatctaa

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0042119 neutrophil activation biological_process
GO:0006935 chemotaxis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016494 C-X-C chemokine receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86 lncRNA downstream 10830 393299 ~ 393852 (-) True G56
TU81 lncRNA downstream 183354 218929 ~ 221328 (-) True G51
TU80 lncRNA downstream 183608 218579 ~ 221074 (-) True G50
TU46 lncRNA downstream 226481 177676 ~ 178201 (-) True G19
TU45 lncRNA downstream 238355 166097 ~ 166327 (-) True G18
TU104 lncRNA upstream 14046 422132 ~ 422409 (-) True G66
TU108 lncRNA upstream 33793 441879 ~ 442209 (-) True G70
TU110 lncRNA upstream 39422 447508 ~ 447882 (-) True G72
TU111 lncRNA upstream 40242 448328 ~ 448640 (-) True G73
TU141 lncRNA upstream 315659 723745 ~ 724036 (-) True G99
XM_043247627.1 mRNA downstream 43079 210723 ~ 361603 (-) True gli3
XM_043238439.1 mRNA downstream 199123 193211 ~ 205559 (-) True prpf4bb
XM_043249769.1 mRNA upstream 14814 422900 ~ 433678 (-) False lztfl1
XM_043249768.1 mRNA upstream 14814 422900 ~ 433678 (-) True lztfl1
XM_043235838.1 mRNA upstream 330051 738137 ~ 745984 (-) True LOC122342053
XM_043235840.1 mRNA upstream 358140 766226 ~ 826226 (-) True LOC122342059
XM_043235714.1 mRNA upstream 642660 1050746 ~ 1116435 (-) True farp1
TU47 other downstream 217597 186420 ~ 187085 (-) True G20
TU105 other upstream 27722 435808 ~ 436125 (-) True G67
unassigned_transcript_1 other upstream 30968 439054 ~ 439128 (-) True trnag-gcc
XR_006252043.1 other upstream 219614 627700 ~ 627818 (-) True LOC122353666
XR_006252053.1 other upstream 721413 1129499 ~ 1129637 (-) True LOC122353706
XR_006250784.1 other upstream 1186672 1594758 ~ 1604984 (-) False LOC122343438

Expression Profile