RNA id: XM_043241560.1


Basic Information

Item Value
RNA id XM_043241560.1
length 6882
RNA type mRNA
GC content 0.47
exon number 22
gene id si:dkeyp-9d4.3
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 5792616 ~ 5833693 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

acacacacacacacatgcgcgcacacGAGAAAGCGACAGCGGATTACAACCTCCAGCGGCCGCGCGCACATCTGCCTGGatgtttacgtaatatatacGGTCTCTCTATGAGCTTCGGGTCAAAGAGACGTCTTACGTTTCGATTTACAGAGCATCTGCTATTTTTGTAGCAATACAACCATGTCGCCGTGCGTAAATACGCGCAAGGTTTCCGCGCCGTCCCTTTAACCTGAAAACGATTGGACTCTGTCACCTCAGCACGCAATAAGACCGTTTTTCGTCGTTGGGGACTGCGTGGACGCTACTGGTCACTCCACTGGGCATGTAAACGCGTCTTAGTGTCTAGCGCGTCTCTGCGCACTCGACCTTTTTACGATGTACGGCGAGGATGCGCTGCCGTTAACGGCACCGTTATGGTCGCCCGGTCCCCTGAAGATGCGCTGGATGTAGAAGTATAGCCATGACCGCATGTGTGAGAGAGGGTGCTTGAGTGTGTGATTGAACAGGATGGGAAAAGAACAGGAACTCTTGCAGGCGGTGAAGACGGAGGATCTGATTACCGTCCAGCGGCTCCTCCAGAGACCCAAACAGGGCAAAGCGAAGCTCCTGGGTGCTGCTAAGAAGGTGAATGTGAATTTTCAGGACACAGACGGGTTATCTGCCCTGCATCATGCTGCTCTTAACGGTAACGTGGAGGTGATTTCACTTTTGCTTGAGTCACAAGCTGTCGTAGACATCAAAGACCAGAAagGGATGCGGCCCCTACATTACGCTGCTTGGCAGGGCAAGTGTGAGCCCATGAAAATGCTGCTCAAGGCGGGCTCATCAGtcaacagccaatcagatgagGGACAGATCCCTTTGCACCTCTCATCACAACACGGCCATTATGAAGGAagcGAGATGCTGCTCCAACATCAGTCGAACCCCTGCCTCAGAGACCACGCTGGGAAAACCCCTCTAGACTTGGCCTGCGAATTTGGACGAGTCACGGTGGTGCAATTACTCCTGAACAGTAACATGTGTGCTGCTATGTTAGAACCGAAGCCCTCTGATCCCAACGGCATCAGCCCGCTCCATTTAGCGGCTAAGAACGGACATATCGAGATCATCAAGTTACTGATCCAGGCTGGTATAGATATAAACCGACAGACGAAATCAGGCACAGCGTTGCATGAAGCTGCTCTCTGTGGGAAAACTGAGGCTGTACGACTGCTGCTGGATAGTGGTATCAGTGCCGGGGTGAGGAACACGTACTGTCAGACAGCGCTCGATATTGTTAACCAGTTCACCACAACCCAAGCCAGCAAGGAAATCAAACAGATGCTGAGAGATGCATCGGCTGCCATGCAAGTGAGGGCTCTGAAGGATTACTGCAACAACTACGACCTGACAAGCCTCAATATTAAAGCAGGCGACATTATCACGGTCTTGGAGCAGCATTCTGATGGACGATGGAAGGGCTGTATCCACGACAACCGAACAGGAAACGACCGCGTGGGCTATTTTCCATCCAACATGGTGGAAGTCATCAAAAGGGCAGGTCCCTCAACCCAACAGTATCTTAAGATACAGATCCGTCCGCCAGCAATTGGTTCAGTTGTCATGGTGAACGGTGACTCCTCCCACATTTTTTCCCTGCCCCTCACTCCCCTTCCCCCTCCTACCCAGCCCCTTACCCATCAGCCCCTCTTCACCTCATTTGGCTATAATATGCCTACCTGCAGCACATTTGGGTATGAACCAGCCTCCTCCTGCTCAGAGGAGCCACAAAAAGAGACAgGCTCAAGGGGATCTGTTTCCAGCCCTCATGGTTCTCCAACCCTTAGCGGCCAGCAGAGTGGAGCTAACGAGGAGATTTGGGTGCTGAGGAAACCTTTAGctgCAGGGGGCAGTGTTGGCAGTATGGGCAGCACAGGCAGTCTGACCAGTGGACGTTCATCTGCTAGCGGACAAAGCAGCAACGCCAACGCTCACCTCACCAACTCACCTGTGCCCGTGCCAACCACCCCCACGCACTCACCCGGGTTGAACACACATGGCCTCAACGTCCCGGGACTGCATGCTCAGGCAGAGGGCGTGAAGctgtTGGCCACGGTGCTGTCCCAGTCAGCCAAAGCAAAAGAACATCTTATGGACCAATCTCAGTCTTTAGATCCTAATTCAGTGTCTTCTCAGCGCACTCAGAGTGCATCTGCTGTCCCACGTCAGCAAAGGAAGAAACCCTTTGTGGATCCATTGCTGCAGAGGAAAGACGAAGCTTCAGCTGAGAGCAAGagctcAGAGGCTGTTGTTGAATGGCTCACTAGTGCACAGCTGCAGTTCTACACAACAAACTTTCTCACTGCTGGTTATGACCTGCAAACCATAAGCAGAATGACACCAGAGGACCTCACTGCTATTGGAGTGACAAAACCAGGGCACAGGAAGAAAATGCTTTCGGagatcagcaaaataaacatcCCAGACTGGATACCTCAAGAGAAACCTTCAAATCTGGCTGAGTGGCTGTCAGCAATTGGTCTCAATCAATACTACCAGACATTGGTTCAGAACGGCTATGACAATATGGACTTCATTAGTGATATTACCCTGGAGGACCTAAAAGAGATCGGCATCACTAAACTAGGACACCAAAAGAAGTTGATGTTAGCTGTCAAACGACTGAGCGAATCTCCAGAAGCAGACATTGTCACCATAGAGAGACAGTTAGAAGAAAGCACAGATTCAAAACAATCATTAGAAACCAGCACAGAACCAGATGAGAACTCTGTCCCCTCTGTTCGAATACGTAAAAAATCAGAGGGGCGTTCGGAGGGGCGTAGCTCTCCCCGGCACAGCACTCAAGGGAGGGGCATACAAAGAGCTAATGCCCCTCCTCCTCTGAAGAAACCCAGTTCAATTGAAAGTCCCACCCCAACACCTCCACACACCCCTACTAAAGGCAGAACTTCATCTTCTGCTTCAAATTCTCCTTCACACATTTCTTCCTCCCCACTAAAAACACAGAGCAGGGCTAGAGGGATTTGCGACTCTCCGCGTTCGCATGCTCACCCTCGTACTGTCCCTTTACTTTGCCTACCACCTGAGGGAGAAACTGAAGAGGGCAATAGTCAAACTCTGCCCCAGCCAAGACGTGGACATTCCATTGTTACTGATGCTGAGCATGACTTACCCATGCCAGACTCCTCTGTGAAATATGCCACACTAGGTGGACACAGGGTTACACCCAGCAGCTCTTCGAGAGCCTCTAGTGAAACTCTTGACATTAACAGTGTCAATCGCAGTCAGTCATTCGCTACAGCTCGGCCGCGCAGACGGACTCGTCCTCCAACTCCACCAAAACGTTCATGCTCTTCAATTTCCACTGGTAACCTGACTGACGAGGTTGCAGCAGATGATGCGAGGTCTAGTGAAAATAGGGCTAACAGTTTGCTGCTCAATGTAACATACAGGGAGCGCAGACGTAGTGACTGTGGCATTGCCTCTGAAAAAACTTCATCTGGGGGCAGCGTAAGAGACATTGCTGCCATGCTTGAAATGTCCAATCTTGGAAACAGTGGCAAAGGAAGTGGTTATCTGCAGGCAAGCCATAATCTCCTGCGGCAGAACCGTGAAGTTCTAAATTCTGATGCAGATAGTCGGCGCCGCACAATCAGTGAATTTTATGACTCTCATAAGCAGTCTGATGATGATATACAAGAGGAAGAGATGAACCGAGTCATGCAGGACTCCACACATCATAGGCCAGCACCTCGTGAAACCCAACCAGTTAAACAGGCCCCTGAACCACGTCCACGTTCCATGATCACTCATCTGGAAGCAGGAGTTTCCTCTCTGCCACAAGAGGAGTGGTCACGGATGGATGCCACAGCAACTTTGAGAAGACCACGACCACCGCATCACTCAGATGGTGAACATTTTAACCTGACAGAAACAAGTACTATAAAGCGAAGGCCTAAAGCATTGGCTCCACCACAGAGTAATGGTACTGATAAAGATGGGCCAGAGAACTTTCGGAGAAGGCCTGTATCAGAAGCTTGTGTTGGAGATGGTGGTAGGGAGGAAGAACTGCATTATGATGGCTTTGGCTCCCTTCCCAGACAAATACTAAAACCCCCAGTTTCACCTAAACCAGCAATGGCCCTTCGAAAACCAGATCCCCCAACTCCTACAAGGAGGGTTCCCTTACCTGGACCAGAAGGTCAACATAGCCCAGTGGAGATTAAAAAAGTTCCACCTCCAGTTTCTCCCAAGCCAAGTCCGCCTCCTACACTTCCCAAACCGGTAAAAATCAAACCAGTCCATACAATTGGAACTCCTGGCTCCCCTCAGGCAGATGTTCTCAGTCCATCCAGTGCCTCCTTCAGCCAAGCTCTATCTGATCAACTGGAGCATCCACCACAGACTTTGAGTCCTGTCACCCCAAAAACAGTGGATGGGAGCATGCTTTCTCCACGTGCAGCAACTTCCCCAGCACAGAGCCCACAAACTCCTCAGACACCCCAAACCCCACAAACACCCTCTACACCAGGTTCAGGATCAGCTCCAGTGAAGCCCCCAAGGTCTTCCATGGCTGGTCTCTCAGTGGACATCCCAAGCCCTTTGGAAGTAGAACTGCCTGGAATGGATGTGCAAAAGAAGCTAAGAGAGGtagagaaacaaagagaggaAGATGACAGTAGGAGGCAAGAAAGAGTAGAGGAAGTTGGAATTGCCAGAATGGAAAGGACAGGTCTGATCCAGGTGGATCAAATGTTCCAAGGTGAACAAGGCCTGATTTCAGATACAGGGGAGGGAGCAGGACCTGTGGTAATGAGAAGGAGGAAGGTAGGTGTTGCCAGACAGACACAAGTAGAGGGTGAACCACAAGATGGAGAAGGAAACACAGAGGTGGAAAGCCAAGGTTTACTGAAGGCTGCTGAAACAGGGGGCTCTGCTTTAGGTGACATGGTACAACTCAGACTGGAGGAGACCAGTGCATCCCTGGCTGCTGCTCTGGAAGTAGTGGAGGAAAAGATTAAGAAGGATGACAGCTCCATTGTGGACAACAAGAGCACAGTCAACATTCTTGATGACATTGGCAGCATGTTTGATGATCTTGCGGATCAGCTGGAGGCCATGTTAGATTAAAATCCCAAAGGTATACCAGATTTCATAGGGAGTGTGACACATTTAAGCTTCTTGAAGTTTCTCAGTGAGGACCACCGGGATGTCATCTCAGAAGGATTGGATTGCTTAAAAAGGGCAAATGAATCTCTTCCATTCCAACATTAAAAGTTTAAAGGTCAAACTACAACTGAGCATCTCAAGAGAAAGCCTAATTGTTGACTAACGTTTTTCTCAAACCCCTTTCATTCTCCACCAGCCTTTCCAGCCAACCAGAGTAGGTACTAAAAGTATGTATCCTGACCTGCTGCTTCCAGAGATAAGCACAAAATTAAGTGGGACTATGTGACAAGCTTTCTAGATATTATTTAAGCAGAGAAATGCTAATACGTGTGCGTATGTGTACATGTTTGTACTAAATGTGGGGTGAGAGTTGAATATCTAAGACCAGTAAAGGTAAGTCATTTTCTCTTGACAATGATGTTAGGAGGCTGTATTATTCTTTTCCACATCTCTGCTGAGAGCTTGTCCACATGTAAAGGGGGACTTTGAATTTCACCTTGTGGTCTTCAGCTGAAAAATGTACTAAACACTTGGTTTGGACTAAATGTATGAAGAGCACAACCCCATTTATGACCCTGAAGATATTAAGACTTTTTTGGACTATTTTGTCCAAGGTTTCTTTGTTCCCTTAAAGTATAATGAAGAAAAGCTTTGGACTTGAAAAGGTATATTGTAATCTTTAtgtatgttattattgttgttgctgttgttgttgttgtcagtgtgtgtgaatgtttgaCTGTGTAGTGTAGTTCTTGCATTGACAAATCCCACCCTGCCCAAGGTATAATACATAGATATAGACAGAATACAGACTAAGATGCTGGAAAGAGTAGTGTATATATGACATATAGGTTATAGTTATCATTGATAGTCTAGAGTATGGAATGCATCAATATGGAATGCTACAGACACCTGCTCATTCCTAATGTGCtctaataagtgtttatgtgtgtgtttgtttgtgtgtttggagggGAGGTCAGTTTGAGAGTGAGAGAATTACGAAGTGTATGTTTATAGTTTGGGGAAAGAGACTGTATGTTTGTCTTCTCTTACAAAAATGTGCCATGTTTTTGGACATGGTACCATGGTATTTTTGAAGTAGCTTGGATGACCATGTTGATTCTACAGTACATGTATATTCTACTCATACAGTACTGTTGTATTACCATCTGATACCATAGTACCACCACCGTACTTTTTTGTAAGGGCTGAGTGTGTGTTAACCTCTCGGACAGTGCAATTATTCCTGTTTTgtcatgcaaacaaacaaaggcTTGCTGACAGGAGAAGTTGCATATTCTATACAAGTGGCTAAAATTAGATAATATAAGACTATGTCATCACAAGATGTTTAAGACTACAGAGCAATATTTTTTATCCATGCACCATGTTATTAATTTTAGCTTTATAAGTGATACTTTAAAACCAGCCATCTGGGATACAACAGAACTGAATATTTTCCGACAATCATGACAATGTTGTCCTTGATTATGACCCTGCAAAGTCAATGGAAATAGATGTTGGAGTATGAAATCTTTTACAGTGTAAAACTGTGTAATAATCAGTTGTTATTTTGTGTAAACCTTCAGATGGCAAATGTGTTTGTCTGaccctggtgaaaaaaaaatatcatcaaAGACCTCTTCCATGTAAAAAGCATTGCGAATATGTggaattaatataaataaattgttatgaATATAA

Function

GO: NA

KEGG:

id description
K21952 CASKIN, ANKS5; CASK-interacting protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1667 lncRNA downstream 2697 5789667 ~ 5789919 (-) True G1151
TU1658 lncRNA downstream 14462 5777098 ~ 5778154 (-) True G1146
TU1622 lncRNA downstream 184698 5579526 ~ 5607918 (-) False G1117
TU1797 lncRNA upstream 136697 5970390 ~ 5974062 (-) True G1240
TU1806 lncRNA upstream 186863 6020556 ~ 6020931 (-) True G1246
TU1809 lncRNA upstream 198203 6031896 ~ 6033999 (-) True G1248
TU1822 lncRNA upstream 228663 6062356 ~ 6063185 (-) True G1254
TU1825 lncRNA upstream 232618 6066311 ~ 6067614 (-) True G1257
XM_043242124.1 mRNA downstream 2995 5784721 ~ 5789621 (-) True LOC122347093
XM_043242216.1 mRNA downstream 15670 5770703 ~ 5776946 (-) False LOC122347131
XM_043242209.1 mRNA downstream 15679 5770703 ~ 5776937 (-) True LOC122347131
XM_043241645.1 mRNA downstream 26593 5746470 ~ 5766023 (-) False radil
XM_043241733.1 mRNA upstream 10451 5844144 ~ 5853249 (-) True LOC122346875
XM_043241742.1 mRNA upstream 12627 5846320 ~ 5853245 (-) False LOC122346875
XM_043242280.1 mRNA upstream 27333 5861026 ~ 5870757 (-) False grapb
XM_043242263.1 mRNA upstream 27334 5861027 ~ 5870757 (-) False grapb
XM_043242272.1 mRNA upstream 27334 5861027 ~ 5870757 (-) False grapb
XR_006252050.1 other downstream 14959 5777571 ~ 5777657 (-) True LOC122353693
TU1193 other downstream 1493423 4298310 ~ 4299193 (-) True G820
TU1152 other downstream 1778329 4007840 ~ 4014287 (-) True G782
TU999 other downstream 3103152 2688765 ~ 2689464 (-) True G654
XR_006250784.1 other downstream 4187632 1594758 ~ 1604984 (-) False LOC122343438
XR_006251180.1 other upstream 12383 5846076 ~ 5853244 (-) False LOC122346875
TU1845 other upstream 277770 6111463 ~ 6113523 (-) True G1270
XR_006251170.1 other upstream 433970 6267663 ~ 6274751 (-) False si:ch211-14k19.8
XR_006251174.1 other upstream 624358 6458051 ~ 6468254 (-) False gaa2
TU2105 other upstream 705835 6539528 ~ 6541383 (-) False LOC122342514

Expression Profile