RNA id: XM_043241616.1


Basic Information

Item Value
RNA id XM_043241616.1
length 4626
RNA type mRNA
GC content 0.50
exon number 16
gene id radil
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 5746470 ~ 5766103 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAAGCGTAACACTTCGCGAGAGCTTCGAGTTCTCGGTTCGGCTTTTTCCGGATACACTCGGCTCCGGGAATGCAGACGCCGAAGCATGCAGACTCTCGTGTAGCCAGTGGAGACGGGCAAATAAAAGAAGGGGGGGAAAGGATAAACAGCTCAAACGACTGCCCAAGAAGAGCGACGAAAAATAAAACCAGCAGTTTTAGGACTTTTTTAACCAATGCGAGCTCCGGCACCATGTTCTACGGTTCCTCATCTGCCAGCATGTCTCTGCCATCCAAAAACCGCCTGAAGCGTCAGAGTCGCACTTTCACCCAGGTTCTGTACCGGACGCTAAGTTACCGGGATCGGCGCTCTGTGACCGACCTACCCGAGCAGGTACGGGACGATCCAGCTGAGCTTTCCACCCAATCATCTGCGCCAGGTGTGCTGAAGATATTTGGGGACGAAATCAGCGCCGGCGCTAACTACAAAAGCGTCCTCGCCACACCTCGTTCCAGTGCCCAAGAGCTGATCAAAGAGGCGCTCGAGCGCTATTCTCTAAACAAGGCCTCGGCCTGCAGCTATGTGTTATGCGACGTGATTGGACGGTTTGAGGGCCCGGATCGACGGTGGCGGACTGAGTGCCTTCGGGCTCTGGGGAACAATGAGAAACCTCTCCTCTTGCAGGACCTCTGGAAGCCAAAGGAGGGCTACTCTCGCCGCTTCGAGCTCAGGCGAAGAGCTGAGGTTGAGGAACTGGCAGCAAAAGAGAAGGACACAGTCACTGCAGGGACCCACACAAACTCCCCTGTGCTATCTTCAACCTTGAGTAGAAGTGGGCATGGTAGATGCCATCGGAGCTCCCCCCGGGGCTGGCGTTTGATACAGCCCTGTACAACTATTGTTAAAGATATCAATGCCCAAGCAAGGAAGCTACAAAGAAACCGTGCTAAAGGAACAATGACACTCCAGCACGGCTCCACATTTTGCCGCAGCCTCAGTGAAACCAGCCTTAACTTGGTGGGTCTGCCTGGTGAGGAACCTAAACGGTACTACTCCACCCTCCCAGGACCAATCAGAACTCGCTCGGCACGAGACTCTGAGACCCGTAAAGAACGAGATGGAGGCGGAGTTAAACACTCTCTCTACCAATCACCACACTTGCTGCTCCTTCAAGGGTACAACCAACAGgattGCCTGGTTTACCTGTTGAATCGAGAGCAACACACAGTTGGTCAGGAAACAGCATCAGCACGGCCAAATATCTGCCTCTCATCTCCGGATGTGCTTCCACTTCACTGCCGAATACGTCGTGCTCCGCAACGGCGCTCTTCCTCGGACCAGCGACTACTCCTGGAGCCCGTCGCTCACGGCAATGTACTGGTGAACTTCATGCGCATCGAGCGGCCCACTCCACTACGTCATGGGGATTTGCTGTCCTTTGGTGCTCATTACATCTTCCTGTACAAAGACCCACTAAATGCAAAACCTCTTCCTGCTCAAACTCTCACTCGACTTCGGGCGCTGGCACGACTATGCGATAACGAGTCGGGTGGTGTGCCTGAGAAAGGGGACGCATGTCGTATGTGTGGGGCTGTGCTGCATGAACCGGTGACATCTCGTCGCAGCTCTAAGGCCCCTGCACGAGGTGCACAGAAACGAAAGCTCGCGCTGGAATTTGAGCGGGCTCACGAGGATGCGCTGGTGAACCGGGTGCTGACGCTTATTGAGCCGAGCGGAGATGACCACAAGCTGACACCAGCATATTTGCTTTGTCTATGCATCAAGCACTCAGCTAATACATTTCCACCTGGCAGCTTCGGTAAACTATTGCTGAAAATTGCCAAGAGGATTCAGACCATAGCATGGGAGAAGACAAAGGAGTTGGCACAGAAGCAAGCTCAGCATCAGGATCCTGCCTCGCTGTCTCTGCTCAGCATCTCAGACCTGGTACCTGATCTCCAGTTCattttcttctggatgtccaaTGCCATcgaaatactgtattttatccAGCAGAAATCACCTGCGTATATGCAGACTATCGAGCTCATGGATGATAAAGCGGGATCTAAAGAATCTCTCCTCTCTGCAACAATATCAGCAAACGAAGAGGCTATGACCATACTAGAGGAAGTGATCATGTACACCTTTCAGCAGTGTGTTTACTACATCACTAAGACCTTGTACGTCGTGTTACCGGGGCTGCTGGACTGTAACCCATTTGGGACGGAGTCTGCATCAGAGCAGTGCCGGCGGGCtgttggagtgtgtgtgtgtgctgtgtgtgtgatgccAGAGGCGGTTCGCAGGGTGGTGAGTGTGTTTCAGACCACATCAGACCTGCTGCAACAGTACCAGGTCCATTCAGAGATTCAGAGTCAAATGTTTGCCTACCTCTTCTTCTTCACCAACGTCTCGCTCTTCAATCAACTCATCGATAAAGGCCCCGCGCGTGGCTGGTTTCAGCGTTCTCGGGTCCTGCAGATCCAGGCTAGTGTGAAGATGCTACTGGACTGGGCTAAAGGAGCGGGGCACAGTCATCTCGCCCAGAAATTCTTCGCCAAGTTCTGTAGCGCTGTGAGCATCCTGGCCACACCCCCACAGCAGCTTTCACAGatGAGCTGGAAAGCTTTGTGTGCAGAGCATCCATCTCTAAAGCCTGTGCAGCTTCACAGAATCCTCACACAGTACCAGCTCATGGCCGAGCTCGGCCCTCTACCAATCTGGCAACCAAGCAGTGAAGATGAGGCATATATCTACAGAACAGTTGATCTGCTCGAGAGTTTTGAGAACCACCCTCCGATTGTGCTGCCGAGTGCTGGATTCAAGGTGGACCTGGAGAGTGACAGTGTGGAGGACAGTATATACCGCCAGCTACTTTACGTACGGCATTTCATTTGGGGTATTCGCTCCAAGACCCATCCTTCTAACGGCTGTGCAGACCGTCAGGATTCCCAGCGTGAGCCTCCTCAGCCTCATTCCAGTCCACATCCAGCACCTCCTTTGCGTGGGGAGGGAGAGGGGGAGGTGCGGGGCTCTTCGGCAGGTCTCGGAGGACGAGGAGAGGGAGCCGGAGCCGAGGAACGACCCAGAGACAAGCCCCCGCATAGCATTCACTACAGAAACGGGACCAGCATCCGTTACGCCAACCAAACCCAAGCAGACTCTTCCTGTATACTGACTCCACCTAATACGCCCCTCTATCCGGAACACACGTATATACACTCCAACACACAGTCCAATCCAGCCCACTACCCCGAGCATGCTTCACAagagcacacacatacacactctcacacaaagTCCAATGGTTGCATGCGTTCAACTCCAGAGCACAAGAAAATCAATGGCTTCATCAGCAATGGCATTGAAGGCCCTTTGAGTGGTTGTGGTTTTCCTTTCCCTGTCCCTGTCTCTCATCTGGCCCCAAACTCTGATGATATCTGTTCCGTCTTTGTAGTGGACCTGGATAAAGGACCTTACGGCCTGGGAATGGGACTTATCGATGGGCTTCATACTCCTCTGAACTCTCCTGGAATCTACATCAGGACACTGATTCCAGATGGACCAGCTGCTGCAGATGGGCGACTTTGCATTGGTGACAGAATCTTGGCAGTGAACGGGACCAGTCTCATTGGAGCAGACTACCAGAGTGCTGTGGATTTGATTCGTCTGGGGGGAGGACGGCTCCGGTTTCTTGTCGCCAAATCAGATCTCGAAGTATCAGAGAAGATCAGTGCCTCTTCCTGCTGAGAGAGAGGCTGCAAGTGTGACCCTCTACCTAGACGAAATATGAGGAGGACAGCGATTCCTTCTTTCCGAGACTGGAGAACAAGCACATAGGACCTCTCAGCGACTATAACTCAGCCCTGTACAATACTGCACTCTTTCTCATTCAGAAGGACGATTTGACACCTCTGTCTTTACCTCTTAGCCGATCTGGTTTCGTTTCTTGAATGTCAAGGAACACTGAAGGGGAAGGGATCTGTGCACATAATCAGGCTGACGATGCTGTAAAATCGGATTAACATTCACATGAACAGAAACGTGGCAAAAGTGGGGTTTTTAAAATGGATCATTTGCTTTATAAAGCATACAAACAATCAAGAgaagaaatcatttcaatatcCTAGCTAAAATCTTTATCTTATCCTTAAAAAGATCTGAGATTAATCTCTTCTTTTTCGTCGATAACAGCTTATCTCTTTCAAATTGTTAGTGAACCAAGGTTTGGCTCAAATACTTGATGATTTCCCCATTGAACGTTGTATATGCTGAACAACTGAGCCTCATTTCACGGTGCAACTTTCCTCCTCTCCGCGTAAATATTCGAACAAAATTCTCCGTTTGCTATGTTAGCAGTATTCGCAACTTTACGTTCCGCATATATACAAGcatatcattttcaaaatgttaatataggACATAGAATTCATACTCTGTTTTGTTTATATCCGAGAGGACGTGATTGCACAAGTttttgaatacaaaaaaaagggtttatttttttcccattatttCATGTTTGTACTAAATCCGTATTGCAGTATTTCATAAacgcattttttttctcagttgtaCTTGTATTTGGAAgatttataatgcaatatacCTTGCTATTAAATCGAACATTGAGAAGTCAAACTA

Function

GO:

id name namespace
GO:0001755 neural crest cell migration biological_process
GO:0007155 cell adhesion biological_process
GO:0007165 signal transduction biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1622 lncRNA downstream 138552 5579526 ~ 5607918 (-) False G1117
TU1623 lncRNA downstream 138552 5603314 ~ 5607918 (-) True G1117
TU1624 lncRNA downstream 138552 5606603 ~ 5607918 (-) False G1117
TU1634 lncRNA downstream 179492 5561377 ~ 5566978 (-) True G1124
TU1620 lncRNA downstream 185615 5560618 ~ 5560855 (-) True G1116
TU1658 lncRNA upstream 10995 5777098 ~ 5778154 (-) True G1146
TU1667 lncRNA upstream 23564 5789667 ~ 5789919 (-) True G1151
TU1797 lncRNA upstream 204287 5970390 ~ 5974062 (-) True G1240
TU1806 lncRNA upstream 254453 6020556 ~ 6020931 (-) True G1246
TU1809 lncRNA upstream 265793 6031896 ~ 6033999 (-) True G1248
XM_043242159.1 mRNA downstream 84708 5656637 ~ 5661762 (-) True arglu1b
XM_043242075.1 mRNA downstream 91385 5646146 ~ 5655085 (-) True efnb2b
XM_043236157.1 mRNA downstream 117403 5625710 ~ 5629067 (-) True LOC122342384
XM_043241868.1 mRNA downstream 130355 5611908 ~ 5616115 (-) True mxa
XM_043240720.1 mRNA downstream 670859 5038724 ~ 5075611 (-) True klf7a
XM_043242216.1 mRNA upstream 4600 5770703 ~ 5776946 (-) False LOC122347131
XM_043242209.1 mRNA upstream 4600 5770703 ~ 5776937 (-) True LOC122347131
XM_043242124.1 mRNA upstream 18618 5784721 ~ 5789621 (-) True LOC122347093
XM_043241583.1 mRNA upstream 26513 5792616 ~ 5833693 (-) False si:dkeyp-9d4.3
XM_043241578.1 mRNA upstream 26513 5792616 ~ 5833693 (-) False si:dkeyp-9d4.3
TU1193 other downstream 1447277 4298310 ~ 4299193 (-) True G820
TU1152 other downstream 1732183 4007840 ~ 4014287 (-) True G782
TU999 other downstream 3057006 2688765 ~ 2689464 (-) True G654
XR_006250784.1 other downstream 4141486 1594758 ~ 1604984 (-) False LOC122343438
XR_006252053.1 other downstream 4616833 1129499 ~ 1129637 (-) True LOC122353706
XR_006252050.1 other upstream 11468 5777571 ~ 5777657 (-) True LOC122353693
XR_006251180.1 other upstream 79973 5846076 ~ 5853244 (-) False LOC122346875
TU1845 other upstream 345360 6111463 ~ 6113523 (-) True G1270
XR_006251170.1 other upstream 501560 6267663 ~ 6274751 (-) False si:ch211-14k19.8
XR_006251174.1 other upstream 691948 6458051 ~ 6468254 (-) False gaa2

Expression Profile