RNA id: XR_006251174.1


Basic Information

Item Value
RNA id XR_006251174.1
length 2805
RNA type transcript
GC content 0.48
exon number 18
gene id gaa2
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 6456044 ~ 6468254 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAACGAATCTGATTCTAATTGCAACTGTAGGACACACGCAACAACACTAACTTCATAACACATGAAACGCCGCTGATGTTTACAAAAGAGCGTACATCGGAGGATATTCATTGATGAGATGTAGCGCGTGAAACACTACAACTGTTGAAAATCCCGCCCGCGTAAAAATTTGAAATGGTGTCTTACAAGAGACTCACGCCTGAGGAGGTTCATTTCTCAGGAGCCGCTTTATTGGATCCTGATGAGTCCACAGATACAGATCTAAAGGAAGTAAACCCAGAACTGCCCCTGCTGCCCCAAAACCATCGCTGCTCCATCACCGTTGCCCTGCTGACCCTTGGGGGACTTATTGTAGTTCTCTCTAGCATCTGGCTGCTTGGAACTATATTTTGGTTGCATAAGCCATTCTCCACAGAACCCCATAGACCCCCTCCACCTGCTGTAGCTAAACGCCCTAACGAGACGTGGCTGCAGCCGGAGTCCTGCTCGCAGATCCCAGAAGCTTGGAGGTTCGACTGTTATCCAGAGAGAGGTGTGGTGGTGACGGAGGACATGTGCCACGCTCGAAACTGCTGCTTCATACAGCGCTCACAGGCCAAGACATCGGGACGGGGTGGAGTGCCGTGGTGTTTCTACGCGCTTGACTATCCATCCTACGAGTTGGTGTCCATTACTGACACAGAGATGGGGAAGGTGGGAAAACTGCTCCGGAACAAAAAGACGTATTATCCTAAAGACATAGATGCACTGCAGATGGAGGTGATGTATGAGGAAGACAACAGACTGCGTGTGAGGATAACAGACCCGGCCGAAAAGAGGTATGAGGTGCCTATAGATGTTCCTGTGGTTGAGAAAAAAGCATCAAATCCCTCTTACACCGTAGAATTCATCAAAGAACCTTTTGGGCTGATTGTCAAGAGAACACAGACAGGAACTGTACTGTTGAATACATCCATAGCTCCTCTCTTCTTCGCGGATCAGTTCCTGCAGATGTCTACATCATTACCTTCCCGTTTCATTTATGGACTGGGTGAACATCGCTCCAACTTTCTGCACGACCTCCAGTGGAACACCCTCACCATGTGGGCTCGAGATGTCCCGCCAATGGAGCTGACCAACCTCTATGGCGTCCATCCCTTTTATCTTTCTATGGAAACAGATGGAATGGCACATGGGTTTTTCATGCTCAACAGCAATGCAATGGATGTGGCTCTGCAACCTGCTCCTGCCCTCACCTGGCGTATGATTGGTGGGATCCTCGACTTTTACATTTTCCTAGGCCCGGATCCCAGCTCTGTGATTGCACAGTATTTGGATGTTGTAGGGAAGCCTGCAATGCCCATCTTCTGGGCTCTGGGCTATCATCTTTGCAGGTGGGGCTACAAGTCAAGCGACAAAACCTGGAATGTTGTAAAAGAAATGCGAAATTATGGGATACCTCAGgaTGTTCAGTGGAATGACATTGACTACATGGATAATGCCTTAGACTTCACTTACGACACTGTGAACTTTTCCAGCCTTCCTGACCTTGTGAAAGACCTTCATAGACATGATCAGCATTACGTCATGATCTTGGATCCTGGTATCAGTAACTCTCAGCTGCCTGGCTCTTACTGGCCATTTGATGAGGGGATGAAGAGAGGCATCTTCATCAATGATTCGAATGGAGACGTCCTAATCGGGAAGgTCTGGCCAGGACTCACAGCATTTCCAGATTTCTCCGATCCAGATACACACGAATGGTGGTACCAGAATCTGAAGCGTTTCCATGAAAAAGTGCCTTTTGATGGCGTGTGGATTGACATGAATGAGCCATCTAATTTCTTTGATGGATCACTGAATGGTTGCCCAGACAATGAACTGGAAAATCCTCCCTACACTCCAGGTATTCTGGGTGGTACATTAAAGGCCAAGACTGTGTGTGCATCTGCACGTCAGAAAATCTCCACTCACTACAACATACACAGTCTGTATGGACTCATGGAAGCTAAGGCTACTGAAAGtgCTTTGAGGAAGATCACAGATAAGCGCCCCTTCGTCATTTCCCGCTCTACGTTTCCCAGTCAGGGCAAGTATTCGGGCCACTGGCTCGGAGACAACAGGAGCCAATGGAAAGATCTGGCCACATCCATACCagGTATGCTGACATTTAACATCCTTGGCATTCCTCTCATTGGGGCTGACATCTGTGGCTTTGGGGGCAGCACTACAGAAGAACTGTGCGTCCGATGGACCCAGCTCGGAGCTTTCTACCCCTTTTCAAGAAATCACAACTCCATAGATGAGCAGAATCAGGAACCAACTGCATTCAGCCCTGCAGCTCGTATAGCAATGAAAGAAGCCATTCTCCTGCGTTATTCTCTGTTCCCACATCTCTACACACTCTTCCATCACGCACACAGCAGTGGACACACAGTCGCCACACCACTGCTCTTTCAGTTCCCAAACGATGAGAAGACGTATGGAATAGATAAACAGTTCCTGTGGGGAAAGAGTTTGCTGGTCACACCGGTTTTAGAGGCAGGGCGAGATTATGTTGTGGGATATTTCCCTAAAGGCCTCTGGGTGACTCATTGGTAAGCAGTGGAGAAGAGATCAATCTTAAGGCACCGACAGACAAAATCAACCTGCATCTCAGAGAGGGTTCAGTCATACCTACACAGAGACCTAACACGACCCTGTGGGTGAGCAGCGGTCAACCTCTTCATCTGATTGTGAGTCTAAGTGAGGACGGCCTGGCGAACGGTGATTTATTTTGGGATGATGGAGAGACCCTCGACACATATGAGAAAGATCAATACGCT

Function

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function
GO:0030246 carbohydrate binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2035 lncRNA downstream 44470 6413382 ~ 6413581 (-) True G1398
TU2031 lncRNA downstream 68414 6389420 ~ 6389637 (-) True G1394
TU2016 lncRNA downstream 129990 6327023 ~ 6328061 (-) False gng13a
TU1868 lncRNA downstream 232161 6224268 ~ 6225890 (-) False socs1b
TU1869 lncRNA downstream 232161 6224268 ~ 6225890 (-) False socs1b
XR_006251203.1 lncRNA upstream 19390 6487644 ~ 6490193 (-) True LOC122347249
TU2204 lncRNA upstream 314159 6782413 ~ 6839409 (-) False G1499
TU2227 lncRNA upstream 334040 6802294 ~ 6802755 (-) True G1519
TU2188 lncRNA upstream 367400 6835654 ~ 6839409 (-) True G1499
TU2190 lncRNA upstream 367400 6835654 ~ 6839409 (-) False G1499
XM_043241782.1 mRNA downstream 5409 6439035 ~ 6452642 (-) True micall2b
XM_043241771.1 mRNA downstream 6428 6439035 ~ 6451623 (-) False micall2b
XM_043241774.1 mRNA downstream 6841 6439035 ~ 6451210 (-) False micall2b
XM_043241711.1 mRNA downstream 107550 6339847 ~ 6350501 (-) False ubn1
XM_043241703.1 mRNA downstream 107550 6339847 ~ 6350501 (-) True ubn1
XM_043236352.1 mRNA upstream 65247 6533501 ~ 6544558 (-) True LOC122342514
XM_043242391.1 mRNA upstream 77707 6545961 ~ 6547468 (-) True LOC122347228
XM_043241908.1 mRNA upstream 111950 6580204 ~ 6593716 (-) False LOC122346971
XM_043241917.1 mRNA upstream 111950 6580204 ~ 6588774 (-) True LOC122346971
XM_043241941.1 mRNA upstream 120803 6589057 ~ 6593789 (-) True LOC122346986
XR_006251170.1 other downstream 183300 6267663 ~ 6274751 (-) False si:ch211-14k19.8
TU1845 other downstream 344528 6111463 ~ 6113523 (-) True G1270
XR_006251180.1 other downstream 604807 5846076 ~ 5853244 (-) False LOC122346875
XR_006252050.1 other downstream 680394 5777571 ~ 5777657 (-) True LOC122353693
TU1193 other downstream 2158858 4298310 ~ 4299193 (-) True G820
TU2105 other upstream 71274 6539528 ~ 6541383 (-) False LOC122342514
XR_006250919.1 other upstream 603335 7071589 ~ 7127407 (-) False trpc5a
TU2401 other upstream 694069 7162323 ~ 7169421 (-) False G1642
XR_006250549.1 other upstream 737330 7205584 ~ 7295633 (-) False dmd
XR_006250550.1 other upstream 750732 7218986 ~ 7295679 (-) False dmd

Expression Profile