RNA id: XR_006251180.1


Basic Information

Item Value
RNA id XR_006251180.1
length 3585
RNA type transcript
GC content 0.46
exon number 6
gene id LOC122346875
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 5844144 ~ 5853249 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttctattttttgcttCAGCGTGTCAATAGGAAATATGAGtctacatttccaaacattaatttttgcattaattgtaataatccagtgagatttttgtttatacattGAGTCTGACAACAGTCGGTCAACTAAGAGATCTAATCTCATCATAATCCAGTCTCTCtaaaaatgacatgaagaaagagaacaaactgagacagactaAACCCACAAAAACTGTGGCAACATCTCCAAGATGTTTTAATTAGGcctgtttatttatatgtgatTTATGATTAAACATCAGAAAACCACGAACATGCAAATTTACTTTagaattatttcaatattaatttgAAATCTGAAGTAAATAATTTAGGTCAAAGGGGTTCGGCTGCCAAAAGCATTTGAGAAACCCttgctataaaataataaaaccaatattaaaaataaacataaataataagtgacaattatgaaacaaattattCCTTAGTAGCCAGAATAGCAGACTATATAAAACCATTGCTAGAAGGAAAAATGCACGTTCATGCAAATGGGTTCCAAATAAACTTCCTGCGGCAGCTTCCATGTGCGAAACCAGCCCCAAAAGCCCATTTAAGTGCCTGCATGCTTATACAAAGTCAGAGGGCGGAAATAGGAAGCgtttctttcactttctttgGTTTCCTGCTACTTTTTTCTTCCCGGATACCCCGCCCAAAACCCGCGTAACTGTTGACTCAGCCGCTCGCCTCGTCATCGGCGCTCGAGCCAGCAGACATCCAGCCTCTTCCTCTTTCCAGCTCCACAGAAGTAGGGCAAAGTAACACAAAAGCCCCACAGGACCTCACTGGACAACAAGCCCGAGGCAACATTTATACCGGGAGACGGGGAAGAAAGTTTTGTTTGACTTGCAACGCCCTTGTAAACAATCCGGAAGCTTGTTTTGGTCGTCGGAGGTTTCCATGCTTTTGTGGAAAACCCTAAACTCGGATCCCGTCGGTTTGGCTGCTATCTGTTGCGCGcgcgtatatgtgtgtgtgtgtgtgtgtgtgtgcctcccGGTCAGGTGACTGAGGTGTGTCTAATCACTAGAGCCTGTGGAGATGCTTTGTTCTATTCTACCTGTTGGTTAACTGAAAGATGATCTCCGGCTCAGCGGTCAACTGCGTCCTGTACTGAACTAGGACTCGGACTCTGCTCGGGGAAACATGATCAAACAACACGCGAGGCGTCTTTTATCTTTATAAGAAGCAATTTCGGCTTTATCTTTATGGTAAAACGAGCTTTTGGTGCGTAAGTTCACAAGAAAAGAATCCCCGGGTCTCACTTTACCATGGAAACCCTTTACCTCGATCGCAAAAGGAGTTTTTTCTAGTAGTGAACAAACTCTACGAAGAGTTCTTATACTTTTCTGGGGTCGCAGTGACACTTAATAGCAAGGAGAAGAAATAAGAGTCCGTTTTAATTCGGTTCGCGTGCGGAAACGCTATGGCTCTCTCTCAGGTTCAGTGTCTGGATGACAATCATGTGAACTGGCGTCTGAATGAATCCAAACCGGAGTTTTTTTACAGCGAGGATCAGAGGCTCGCGCTCGAAGCGCTTATTACGAAAGGACGCGACGCGTTTGACGCCTACGTGAAAGAGCGCGAGCTGCGGTCTTTTCTGTCGGAACCCGAACTGGAGCGGTTGCGTCGGAGCATAGAAGATTATAAACCCGGCTCCGAGCATCAAAAACCAGACGGTACTACAGAGGGAGAGGACGGCGCGGTTTCATTGCAGTATTGGCCGGACCGCTCCGATATCTCCATACCCAATCTGGACCTCGGATGGCCAGACTGCAATTCTTACCGCGGGGTGACGCGCGTCAATGTGTACACACAACCGCCCGTGGACGGACAGACGACGCATATAAAAGAGGTTGTGAGAAAGGCCATCGCGCAAGCACAGAAGatGATTGCTGTGGTGATGGATGTTTTCACAGACGTTGACATTTTCAAGGATTTAATAGAGGctggttttaaaaagaaagtagctatatacattattatagatATTGCAGCTATACAGCACTTCCTATTTATGTGTGAGAGAGCCAATATGCACAGAGGACACCTCAATCATCTTCGCGTGCGATGCATTGGTGGTGCCGAATTCTTTTCACGCTCAGCTCAGAAGTTGTGTGGCTCGTTGAATCAGAAATTCATGTTTGTGGATGGAGACCGTGCTGTGTCCGGATCATACAGTTTTACATGGACAGCTTCTCGTTTGGATCGCAACATCATTACAGTCCTGACCGGACAGGCTGTTGAAACTTTTGACAAGCAGTTTCGTGAACTATACCTGAACTCTCGTGGGGTCAATCTAACCAAGATCCCATTAGCGGACCCCCCAGAGCCTGACCCTGCTCCAATCACTGTTCCTCCTCCTGTTCCAGTATCTGTTGCAAGAAAATTAATTAACCCCAAATATGCATTACTTAATATAGATTCAGCAAGCAAAGCCTCTTCAGACAAGGCTAGTGCCAAGAACAGTAACTCCAAAAATCCAATGGTCCAGATTCCCAAGCCTCAACGGGAGTTGATAGAAGTACCGCAAAAGCACCCAGGACTTGTAGGTCTGCCAAAGGCAGATCTCATTCCCTACTTGCCCATCTGGCCCGAACCAGACCCACCCAGTGATGTTATTGGGTTTATTAATATCCGTGACACAAGCAAGCCAACGCAGGTACATTTAATGCGCTCACAAATGTTCGAAACATCTCAAGCGATCCGTTTTAAAGACCCTTTCACTGCCCCGCCTGAGGAACCGTTACCAGATAAGGCAAGTCCTCGTTCTAAAACAACACAATTGCCTAAAACAGATACTGTAGATGCAAATGTGCAATCGAGCACCAAAACTCAGCCAGAAACTGAGTCTAGCGTTGCCCATCAAGATGCCACAGTGAATGCATCCCATTCGCCAAGCTTGCCGATCCAGCAAGAAGAACCCAAACCCAACCCTCCTCCACAAGAGCAGCAGTCCAATCCTGAACCAGCAGAAGTCAAACAGACTTTAGATCTGCCCGTGCCCAAGCCACGCACTCTTCAGTTGGTGGTTAATAGACCCGAGGGCTCTGGAGATGCAGAGGTCACTTTAGTCAGAAGGGACGAAAACCAGACAAAGGAGGCAAACACGGACACTCGCGACAATGATGCCGACAGCACCGCTGTCACCTGTGCACATTCATTAAAGGATAAAGATGAGAATTCCACAACGTCGGATGAATACTACGAATGTACTGACTCTGACAGTAGTGACAAACTCCCTAACGGAAGGTTAACGGGATCCGGTCGTGTTAGAGACCACAGCACTGATGCGCTTAACGTGATGGCCCGTTTCTCTCAATCCATGCTGGACTTGCGATCGGATGATGTCGAACAAAACACTGCTGAGAAAAATCTGCTGAACAGGGATAAAGCAAAgCACTAGCGGAAACAGCAGCTGGAGCGTGTGTGTAGTACCTGGGTAGAGTGCCCTGCTGATCATGCCAGCTTTACCACATGGGTTCCAGGTCACCCGTTCGAGACAATTATGGCCGGGCCAAAGTGGTGATTGCTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1667 lncRNA downstream 56157 5789667 ~ 5789919 (-) True G1151
TU1658 lncRNA downstream 67922 5777098 ~ 5778154 (-) True G1146
TU1622 lncRNA downstream 238158 5579526 ~ 5607918 (-) False G1117
TU1623 lncRNA downstream 238158 5603314 ~ 5607918 (-) True G1117
TU1624 lncRNA downstream 238158 5606603 ~ 5607918 (-) False G1117
TU1797 lncRNA upstream 117146 5970390 ~ 5974062 (-) True G1240
TU1806 lncRNA upstream 167312 6020556 ~ 6020931 (-) True G1246
TU1809 lncRNA upstream 178652 6031896 ~ 6033999 (-) True G1248
TU1822 lncRNA upstream 209112 6062356 ~ 6063185 (-) True G1254
TU1825 lncRNA upstream 213067 6066311 ~ 6067614 (-) True G1257
XM_043241583.1 mRNA downstream 12383 5792616 ~ 5833693 (-) False si:dkeyp-9d4.3
XM_043241578.1 mRNA downstream 12383 5792616 ~ 5833693 (-) False si:dkeyp-9d4.3
XM_043241569.1 mRNA downstream 12383 5792616 ~ 5833693 (-) False si:dkeyp-9d4.3
XM_043241560.1 mRNA downstream 12383 5792616 ~ 5833693 (-) True si:dkeyp-9d4.3
XM_043242124.1 mRNA downstream 56455 5784721 ~ 5789621 (-) True LOC122347093
XM_043242280.1 mRNA upstream 7782 5861026 ~ 5870757 (-) False grapb
XM_043242263.1 mRNA upstream 7783 5861027 ~ 5870757 (-) False grapb
XM_043242272.1 mRNA upstream 7783 5861027 ~ 5870757 (-) False grapb
XM_043242245.1 mRNA upstream 7784 5861028 ~ 5870757 (-) False grapb
XM_043242253.1 mRNA upstream 7784 5861028 ~ 5870757 (-) True grapb
XR_006252050.1 other downstream 68419 5777571 ~ 5777657 (-) True LOC122353693
TU1193 other downstream 1546883 4298310 ~ 4299193 (-) True G820
TU1152 other downstream 1831789 4007840 ~ 4014287 (-) True G782
TU999 other downstream 3156612 2688765 ~ 2689464 (-) True G654
XR_006250784.1 other downstream 4241092 1594758 ~ 1604984 (-) False LOC122343438
TU1845 other upstream 258219 6111463 ~ 6113523 (-) True G1270
XR_006251170.1 other upstream 414419 6267663 ~ 6274751 (-) False si:ch211-14k19.8
XR_006251174.1 other upstream 604807 6458051 ~ 6468254 (-) False gaa2
TU2105 other upstream 686284 6539528 ~ 6541383 (-) False LOC122342514
XR_006250919.1 other upstream 1218345 7071589 ~ 7127407 (-) False trpc5a

Expression Profile