RNA id: XM_043241941.1


Basic Information

Item Value
RNA id XM_043241941.1
length 2336
RNA type mRNA
GC content 0.38
exon number 2
gene id LOC122346986
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 6589057 ~ 6593789 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTgaagaacaaaaagcaaaacgCGATTGTAGTTTGATGTCAGAAGAAACCGTTTTAAACAGTGCAGTTGAAATAAAAGCTGGAGTTGTTTGGAGGTTGTGAAAGTTTTCTTGAGGAATCCTAACGTTCGCGCATTGGTGCCATGAAcggacagatttttcagtcaCGTGGCAAAATCTTGATAGCCCTTTTACTGATAACTGTCCCAGTTGTTCAGAGCGGGAATGTTCTTGTCTTTCCTGTGGATGGCAGTCATTGGGTCAACATGAACATCTTGGTGGAGGCCCTTCATGACAAAGGTCACAATGTTACAGTCATTCGGATGGCAGACAGCTGGTACATCAAAGAATTCTCACCTCACTACACATCAGTCACTATAAATTCACCAGGAGGATTCGATGAGGAATTCTTTGAGACGTTTGCATTCAGACTCATGAAAATCCTGAGAGAAGGCTCCACCTGGGGTCGTCTGAAGCTGGAAATAGAGACATGGTTAGGTACTTATGAGCTGATCAAAGTAGAATGTGAGATGATAAAAAGTATGATGGAAGACCAGCAGCTAATACAGTCTTTAAGGGATGCCAAGTATGATTTGCTTCTTACAGATCCGCTTTTGTTTGGAGGTGTTCTTTTGGGCCACTTCCTGAAGCTGCCTATTGTCTACAATATCCGTTGGACGATGTATAGTGAGGCGCATTTTGCAATAGCTCCTTCTCCACTTTCTTATGTTCCTTTTCCGATGGTGGAGTTATCAGACCGCATGAGCTTTTTtcaaagagtgaaaaatttaGTGATGTACACTATAGCTGAAGCTAtgggtgttttgttgtttgctcCAAATTATAATGCACTTTGCGAACGGTTCATTGGCCCAGGAGTCTCCTTCCTTACCTTAGTACAGAGTGCTGATCTGTGGCTCCATAgagttgattttgtttttgaattccCGCGTCCCACTATGCCGAACATTGTCTATATGGGAGGTTTTCAATGCAAGCCGTCAAAGCCTCTTCCCAGAGATCTGGAGGACTTTGTGCAGAGCTCTGGTGATCATGGTGTCATCATCATGTCTCTGGGCACTCTCATTGGTCAGCTTCCTGATGATGTGGCTGAAGCGATTGCTGAAGCTTTTGCAGAACTTCCACAGAAGATCGTCTGGAGGTACAAAGGAAAGAGACCATCTGCTCTAGGAAACAACACCCTAGTGATGGACTGGATGCCTCAGAATGATCTTCTGGGTCATCCTAAGACCAGAGCCTTCGTTGCACATGGAGGAACCAATGGGATTCAAGAAGCCATTTACCACGGAGTACCAATCATTGGATTTGGGTTGATTTTTGACCAGCCTGATAATCTTGCAAAAATGAGAGTACGGGGTGTAGCCAAGAATGTAAACTTTGCCACAGTGGATAAGGACTCCTTCCTTGAAACCGTCAAAGAGGTTCTTTATGATCCCTCTTATCAGGAGAACATGCAGAGGCTCTCAAGGCTTCACAAGGACGTTCCAGTAAAACCTCTGGACAATGCCATCTTCTGGATTGAGTTTGTTATGAGGCACAAAGGTGCTGCTCACCTGCGCACAGAGTCTTACAAAATGCCCTGGTACTCTTATCACTCTGTAGATGTCTTACTGTTCCTGCTATCTGCTGTGACCCTCATAATCTTTATAATATGTGtggttattaaatatttctgtttcagaaTATGTTTAggaaaatcaaaaaacaaacttgAATGACTTTTTTATAGTATCTAAGGtactatattttgttattaagcCACTCTAGGTCGGGCATTTCCTGTATATTAATGACCAAAGCTTTGAatcaaaattatgtttattttgtacagTGATCTAAAGatgttaatttattgatttgtgcATGTTTAAATTTGTGCCATTGTTTAGAACAATATTCTGTATTTCAAAAATGAATTGTGTCAGGtataacatgttttattttacttatattaACTGATTTATCAGTTTGTAATTTCACAAACAATTTAGCAAAATACATGCAATTCCAAATACTCAATAAGCTCATTAAGCTTTAATAGATTAATATTTGTGGTTTGTATGACAGTATTacctaaaaatatacattataaatgttgtcATCAGTAGCTATTTCATaagaatgtataaataattaatttaatatttcaccaaatgtttattatttattttgacaatcatttttatttcagatatgtatatgtatatttcagatatttttatatGGAAAATTAAATTTAGCAAATCAGTTTGATTTAAAGTTCTATGGGGCATTTCACATAATTGTTTATGTACTgacaataatacattatatcgta

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251203.1 lncRNA downstream 98864 6487644 ~ 6490193 (-) True LOC122347249
TU2035 lncRNA downstream 175476 6413382 ~ 6413581 (-) True G1398
TU2031 lncRNA downstream 199420 6389420 ~ 6389637 (-) True G1394
TU2016 lncRNA downstream 260996 6327023 ~ 6328061 (-) False gng13a
TU1869 lncRNA downstream 363167 6224268 ~ 6225890 (-) False socs1b
TU2204 lncRNA upstream 188624 6782413 ~ 6839409 (-) False G1499
TU2227 lncRNA upstream 208505 6802294 ~ 6802755 (-) True G1519
TU2188 lncRNA upstream 241865 6835654 ~ 6839409 (-) True G1499
TU2190 lncRNA upstream 241865 6835654 ~ 6839409 (-) False G1499
TU2192 lncRNA upstream 241865 6835654 ~ 6839409 (-) False G1499
XM_043241917.1 mRNA downstream 283 6580204 ~ 6588774 (-) True LOC122346971
XM_043242391.1 mRNA downstream 41589 6545961 ~ 6547468 (-) True LOC122347228
XM_043236352.1 mRNA downstream 44499 6533501 ~ 6544558 (-) True LOC122342514
XM_043241672.1 mRNA downstream 120807 6456044 ~ 6468250 (-) True gaa2
XM_043241771.1 mRNA downstream 137434 6439035 ~ 6451623 (-) False micall2b
XM_043241215.1 mRNA upstream 120956 6714745 ~ 6761771 (-) True LOC122346519
XM_043241223.1 mRNA upstream 126672 6720461 ~ 6761771 (-) False LOC122346519
XM_043236570.1 mRNA upstream 172273 6766062 ~ 6770577 (-) True c1h7orf26
XM_043242572.1 mRNA upstream 188744 6782533 ~ 6791869 (-) True pgap6
XM_043242581.1 mRNA upstream 188744 6782533 ~ 6791859 (-) False pgap6
TU2105 other downstream 47674 6539528 ~ 6541383 (-) False LOC122342514
XR_006251174.1 other downstream 120803 6458051 ~ 6468254 (-) False gaa2
XR_006251170.1 other downstream 314306 6267663 ~ 6274751 (-) False si:ch211-14k19.8
TU1845 other downstream 475534 6111463 ~ 6113523 (-) True G1270
XR_006251180.1 other downstream 735813 5846076 ~ 5853244 (-) False LOC122346875
XR_006250919.1 other upstream 477800 7071589 ~ 7127407 (-) False trpc5a
TU2401 other upstream 568534 7162323 ~ 7169421 (-) False G1642
XR_006250549.1 other upstream 611795 7205584 ~ 7295633 (-) False dmd
XR_006250550.1 other upstream 625197 7218986 ~ 7295679 (-) False dmd
TU2800 other upstream 2009511 8603300 ~ 8607795 (-) True G1926

Expression Profile