RNA id: XM_043242216.1


Basic Information

Item Value
RNA id XM_043242216.1
length 2151
RNA type mRNA
GC content 0.42
exon number 8
gene id LOC122347131
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 5770703 ~ 5776946 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGAGTGTGAATGCGCCGAACTAGCAGGCGAtgctttgtctgaagccagcaTCCTACACGGATTGAGTATAAAGCGGACCGGACCTGGACGATCCGCTCGTTTCTCTCAGCAGGAAGACCGGGGTCCTGAAACCGTTACATGCGCTCTACTTCCGGATCACCACTAACGCTCGCTTCGTTGTAGACCTCATCCCACGAATGTTATTTTAAGAGTGATTgtctttttttcgtttttttttttctttttttataatcgGCGTGTGTCTGAAAGACGAGCCGCTCCTCGAGATCCCGAACCGAGCCGCGCGCGTTACCCATACTCGAGCAACTGTTGGATTTACGCGTTTAAATGAAACTTGTAAGatttatgaaCAATCGTGCACCATCTAATAAGAGATATCAGCCAACAGAATATGAGCACGCTGCTAACTGTGCCACACATGCGcTCTGGATCATTCCCAGCATTGTGGGTGGGATCTTGTTGTACCTCTTATCTGATGACCACTGGGAGGAGATTTCAGCATGGCTCTATGGGGCAGGACTATCAAGCCTTTTCATCATATCCACCGTTTTTCATACTGTCTCCTGGAAAAAGTCTCATCTCCGATCAGTCGAGCACTGTTTCCACATGTGCGACAGGATGGTGATATATTTCTTCATTGCGGCGTCCTACACACCTTGGCTGACGCTGCGGGATCTTGGCCCATGGGCTGCCCACATGCGTTGGGTGGTCTGGGTGATGGCAACTGGAGGAACCGCCTATGTGTTCTTCTTCCATGAAAGGTTTAAAGTTGTAGAGCTGATCTGTTACATAGCTATGGGTGTTTTCCCAGCTCTTGTCATCCTCTCTATGGCAGACAGGTCAGGTCTGTGCGAGCTGTTGGTTGGCGGCGGGTGTTATGTGCTGGGCATGGTGTTCTTTAAAAGTGATGGAATAGTGCCCTTTGCTCATGCTATATGGCATCTGTTTGTTGCAATGGGAGCAGGCGTCCATTACTATGCCATCTGGAAGTACCTGTACACGCCTGTCAATCAACCAACCAGTCTTTAACTAGCACACACAACAGAAATTACATCTAGCCTTTGCGAGACAGCAGGAAGCAGGGGTCATTTCGGACCCGAGGCCGTGTGGATCCAGAACAAGAACGCTTCTAGAAAACCGTGGACGCGTTGCATGAAGGTTTACTATTGTTTTCAAAAGCGAAGGTAAAATCACTGCcagatatttgtaaaaacattcatCCTGGATAGTAATTACTTGACGACGTCGATGAGGTTTTTCTGTAGTGTCTTTAAACCGACTTGGGATTATTCCACTGAATCTGCCACTGCCAGTGTGGAGATTGTTTTATTCCTGTCAGAAATATGAGCGCATTTCGTATTACTGCACACAGTATCAGCTCTCCATGCTTCCAGTCTAGTGCTAGTCTGTCGCATTTTTGGATGTGTAATGTCTTTGGAAAATGCCATAAGTGCTTGATGACTGTGTCCAGGGAAAGGTTTGCCTGACTGGTCATCTGATTACATTATTCAATGGAAAAGTTCAGGCTCTCGTATTAtgattgtgcatttttttttattttaagacgtGTTTAATGTGGTAacatctatttattaatttttaatcaagtcagagtattatttaatattctaattaatatttaacgACTGAATCACAATGGATACATCATAGGATTACACCAACAAACCATTTTAAGCTTTaacacatttacagtttttgcgCCATTGAGACTTGCTTGGTGCCAATGAAAACGCGTTTTGGTTGTTATTTATTCGTTTCAATTTACAGCTGCTGTAGATGTTGTGTTACAGATCATTTTATAAGGGAACTTAATAGGGTGTGAAAAACATTGTACACTGAAAATCATCAGCTactcatttttatcatttaactaATTCACGAACAGGAACTACATTTTGAGAGAAAACTGATGCACTGACTTCACCTCAGATCAGTTTGAGTGTCATTAAAGAAACAATGCATCCAAAACTGAAACCTGTCAGCATTTACTCACACGTTTAGTTCCATACCTgcgtttttttgtctttcttttgtagaattctaaatgaaacatttagcagaatgtccaggctgttttcttttttttttaattaatcgcataaaaaagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1622 lncRNA downstream 162785 5579526 ~ 5607918 (-) False G1117
TU1623 lncRNA downstream 162785 5603314 ~ 5607918 (-) True G1117
TU1624 lncRNA downstream 162785 5606603 ~ 5607918 (-) False G1117
TU1634 lncRNA downstream 203725 5561377 ~ 5566978 (-) True G1124
TU1620 lncRNA downstream 209848 5560618 ~ 5560855 (-) True G1116
TU1658 lncRNA upstream 152 5777098 ~ 5778154 (-) True G1146
TU1667 lncRNA upstream 12721 5789667 ~ 5789919 (-) True G1151
TU1797 lncRNA upstream 193444 5970390 ~ 5974062 (-) True G1240
TU1806 lncRNA upstream 243610 6020556 ~ 6020931 (-) True G1246
TU1809 lncRNA upstream 254950 6031896 ~ 6033999 (-) True G1248
XM_043241616.1 mRNA downstream 4600 5746470 ~ 5766103 (-) False radil
XM_043241621.1 mRNA downstream 4624 5746470 ~ 5766079 (-) False radil
XM_043241634.1 mRNA downstream 4625 5746470 ~ 5766078 (-) False radil
XM_043241639.1 mRNA downstream 4661 5746470 ~ 5766042 (-) True radil
XM_043241645.1 mRNA downstream 4680 5746470 ~ 5766023 (-) False radil
XM_043242124.1 mRNA upstream 7775 5784721 ~ 5789621 (-) True LOC122347093
XM_043241583.1 mRNA upstream 15670 5792616 ~ 5833693 (-) False si:dkeyp-9d4.3
XM_043241578.1 mRNA upstream 15670 5792616 ~ 5833693 (-) False si:dkeyp-9d4.3
XM_043241569.1 mRNA upstream 15670 5792616 ~ 5833693 (-) False si:dkeyp-9d4.3
XM_043241560.1 mRNA upstream 15670 5792616 ~ 5833693 (-) True si:dkeyp-9d4.3
TU1193 other downstream 1471510 4298310 ~ 4299193 (-) True G820
TU1152 other downstream 1756416 4007840 ~ 4014287 (-) True G782
TU999 other downstream 3081239 2688765 ~ 2689464 (-) True G654
XR_006250784.1 other downstream 4165719 1594758 ~ 1604984 (-) False LOC122343438
XR_006252053.1 other downstream 4641066 1129499 ~ 1129637 (-) True LOC122353706
XR_006252050.1 other upstream 625 5777571 ~ 5777657 (-) True LOC122353693
XR_006251180.1 other upstream 69130 5846076 ~ 5853244 (-) False LOC122346875
TU1845 other upstream 334517 6111463 ~ 6113523 (-) True G1270
XR_006251170.1 other upstream 490717 6267663 ~ 6274751 (-) False si:ch211-14k19.8
XR_006251174.1 other upstream 681105 6458051 ~ 6468254 (-) False gaa2

Expression Profile