RNA id: XM_043242829.1


Basic Information

Item Value
RNA id XM_043242829.1
length 3237
RNA type mRNA
GC content 0.42
exon number 2
gene id rap2ab
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 1148672 ~ 1164935 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGTCAATCCCGCAACAAAACTCCTATCCTCGAGCCGAGACGGTGTGCTCGGGCTTCAGAAGGTCTCCACCCGAGAGTATGGCGGTTGAGGATGCTGGAAGATGCAGAAGAATAGCTATTCCGGAATGCAGCAGCGTCCTTAAGGATCTCCAAATGACGCTCGGAGGGGACGCGTGATGACGGGGCGCGACGCGCTTTTATAACCTAGAACGCAAGCCAATGCATGTTAAAAGATTATTTCTCCAAGCAGCTGTCGGGTTCTGGCTATTCGAGGCGGCTAGAGATGCCATGAAGTCCGCGCATCGGCTCTTTGTGCGCCTCTGTTATTTGTCTCTATGGTGAGTGTTGCAATACAGCCGGCCATGGCTCCGCGTCTGCTCGACTTCTGCGATATTCAAGGCAAGTTTCCCGTGGCATCCGATCGGTTTGGACACTGTTAGCTGGCTCCGTTACGCGCGTCACGTCGGTTCGCATCCGTGCGCAATGCGCGAGTATAAGGTGGTGGTGCTGGGCAGCGGAGGGGTCGGGAAGTCCGCGCTCACGGTGCAGTTCGTGACCGGGACCTTCATCGAGAAGTACGACCCGACCATCGAAGACTTCTACCGCAAGGAGATCGAGGTGGATTCGTCGCCGTCGGTGCTGGAGATCCTGGACACGGCCGGGACGGAGCAGTTCGCGTCCATGCGGGATCTCTACATCAAGAACGGCCAGGGCTTCATCCTGGTCTACAGCCTGGTCAACCAGCAGAGCTTCCAAGATATAAAGCCCATGAGAGACCAGATCATCAGGGTGAAGAGATACGAGCGCGTGCCCGTGATTCTGGTGGGAAACAAGGTGGACCTGGACAACGAGCGCGAGGTTTCATCGAGCGAGGGCCAGGCTCTAGCTGAAGAATGGGGCTGCCCGTTCATGGAGACGTCGGCCAAGAGCAAAACCATGGTGGACGAACTGTTCTCGGAGATAGTCAGGCAGATGGACTACGCCTCTCAGCCGGATAAGGAAGACCCGTGCTGCTCCTCCTGCAATATACAATAACCCCTCACAATCACACGAGGTTCTCGGAGGGGTTCCACGTGGAGATCGTCGCTAAAGAGTGGTCTTCAAACACGCGTGAACGGCGTCTACACACTAGAGAATGCTGCAGATCCGTTCTTTTGATGCATCGCGTACATTTATGAGCAAACGTTCTTCCGGTAACGTTAATTGAATGTTCGTTCAACGCGCTCTGCTGTAATGGTCTGATGTTCTCAGTGTTATTAGTGACCCAcaaccacaaaagcagtcataaaggttgtttttttggaaatttaTTTACGTATCAGACGAATAAAAAAGCTTTCCGTTGACGTATGGTTTGTtagctatttgaaaatctggaatctaagtGTGGGAAAAATCGAAATACATAAAATCGGCAAACGTTTAAattcttagcgatgcatattactaatcataaATGAAGCTTTGATGTGTTTACAGtagaaaatatcttcatgggaCATGATCTTTCCTCAATATCCAAAagattttttggcataaaataattttttttttacttttgacacatataatttattgttggctattgctataaataaacctgtgctacttatgactgcttttgtgctccaggctcacCTTTACACATACATTTCTTAAACGTTTTAATTGGTCGTTTTTCTAACATTGTTTAAACGTTACTATTTGATTTGGAACGTTAGAGGACCTTCAAAAGTGTCTgcaaaatggaaacaaaaagaacatttaaaacataaaaaaaaaaaatgttttgggtgTTCAGagacaaactgaaaaataacGCTTTTATAACATAATAGGAATATTAGCAAAACGTCTTTTCACAtcgtttttttgttcttcttgaTCGTGCAAACATCACAGTAAATATTAATGGAATGTTATCATTTTACTTCTGAATGTTCTCTGAACGTTCTGAAAACGTAAGTGGTAACGttatagaaatgtattaaaatgttcccTGAGCCGTgcataaataattgattttgtGAACATTCAATAGTAAAATTCGCATAAAACTAAAAGAACGTTTTGAACGAGGCCATTGATAAATAACTTTTTCATAACGTAATGGGAACGTTAGCAAAACATTCTTTTTTGCTAAGTTGGTAATGCAAATGTTACagaatgttacttttgaacGTCCTCTGAACATTCCGAAAACGTAAgtggtaacatttaaaaatgtatcaaaatgttCCGTGAGCCATGTGTAAATAATGATTAAGCGCTAACAATAAATGTTCTATTAATGTCGCTGGAAAGAACGTTTTGGGTTGGCGAAAGTGACGTTAAATCGAAAATCCCGCTTGTGTTTCCCTCCAAAAACGGATCGCGAAGTGCGAAGCTTTCTCTAGTGTGTAAATGCCTTAATCCGACACGTTTATGAtgaataaattaacaagaaactgtaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggtcaaaggGGTTAAAAAATGCACCAAACTTGAGTCTTTCTTTTCCCCGCATGTTTTCATTCTAAGTCTGACGCTGTTCGCAAGAGACTCGATCGCGTTGATTTCGTTTAGTTTGCACATATAGAACCTGATGTCTTAAACTGccattactttaataaagagCCAGAATGAGCTAGTTCTGTTCTTCCAAGCGGCCCGCCGTCAGACGTGGTGACGTTTCCTCCGAGGGACTCTCAGACGATGTGTGCGCCGTTGCAGCGATGAGGGGCTTTACTTTGAGGGACATTTTCTTTGAGGAAGCCAAATAGGATGCTGAGAAGCACTTTTCTTTTGTAAAGTCGTGTCTGTTTTGATTTATGAAACTGCTGGGAATATTCAGCTGATTATGTTGTGGTTTCTACTTAGCACCTCGATATAGAATGTTGCAGATACtgaattatgtattttgtaataatgtagtAAAACAATCATGGGATTTGCTTTAGAATAATCGGGTGGGAACAGTATTTGTCATGAAACGCTTTCGGCACTTTCCACAAGAAGAGTCCAGATGTCCTGTTACTTTTATTTGAAGcaataaagatttaaagaagCGGTTCGGTTAACCTAACATTTAATGTAGGCAGTTTTTAACATCTCAAATGTCTGTAAGAAcccttaaaaatgacaatttgtcCTTTTACACCTCAAGAGGTCTAGATGgttaaaatcattaatatatGTTGAACTACtatttgattaaatgcaaaaaataaat

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07837 RAP2A; Ras-related protein Rap-2A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU328 lncRNA downstream 174703 973746 ~ 973969 (-) True G231
TU177 lncRNA downstream 258085 890244 ~ 890587 (-) True G125
TU158 lncRNA downstream 400308 741070 ~ 748364 (-) False LOC122342053
TU141 lncRNA downstream 424636 723745 ~ 724036 (-) True G99
TU111 lncRNA downstream 700032 448328 ~ 448640 (-) True G73
TU331 lncRNA upstream 1573 1166508 ~ 1212143 (-) False mbnl2
XR_006251226.1 lncRNA upstream 91254 1256189 ~ 1263203 (-) True LOC122347488
TU355 lncRNA upstream 117903 1282838 ~ 1284809 (-) True G244
TU361 lncRNA upstream 179363 1344298 ~ 1346789 (-) True G247
TU386 lncRNA upstream 276153 1441088 ~ 1441512 (-) True G260
XM_043239696.1 mRNA downstream 11607 1117841 ~ 1137065 (-) True kpnb3
XM_043235714.1 mRNA downstream 32237 1050746 ~ 1116435 (-) True farp1
XM_043235704.1 mRNA downstream 32246 1050746 ~ 1116426 (-) False farp1
XM_043235840.1 mRNA downstream 322446 766226 ~ 826226 (-) True LOC122342059
XM_043235838.1 mRNA downstream 402688 738137 ~ 745984 (-) True LOC122342053
XM_043242651.1 mRNA upstream 1752 1166687 ~ 1231647 (-) False mbnl2
XM_043242734.1 mRNA upstream 1752 1166687 ~ 1231647 (-) False mbnl2
XM_043242706.1 mRNA upstream 1752 1166687 ~ 1231646 (-) False mbnl2
XM_043242750.1 mRNA upstream 1752 1166687 ~ 1231646 (-) False mbnl2
XM_043242697.1 mRNA upstream 1752 1166687 ~ 1231646 (-) True mbnl2
XR_006252053.1 other downstream 19035 1129499 ~ 1129637 (-) True LOC122353706
XR_006252043.1 other downstream 520854 627700 ~ 627818 (-) True LOC122353666
unassigned_transcript_1 other downstream 709544 439054 ~ 439128 (-) True trnag-gcc
TU105 other downstream 712547 435808 ~ 436125 (-) True G67
TU47 other downstream 961587 186420 ~ 187085 (-) True G20
XR_006250784.1 other upstream 429823 1594758 ~ 1604984 (-) False LOC122343438
TU999 other upstream 1523830 2688765 ~ 2689464 (-) True G654
TU1152 other upstream 2842905 4007840 ~ 4014287 (-) True G782
TU1193 other upstream 3133375 4298310 ~ 4299193 (-) True G820
XR_006252050.1 other upstream 4612636 5777571 ~ 5777657 (-) True LOC122353693

Expression Profile