RNA id: XM_043243767.1


Basic Information

Item Value
RNA id XM_043243767.1
length 1526
RNA type mRNA
GC content 0.51
exon number 12
gene id eed
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 2720655 ~ 2723920 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGAGCGCGCACGCTCTGCTTTCCGGCAGCGTGGCACTGCTGGTGGAGAAAGATGCGGAGGAAGATGTCTGAATCTCATGCCGAGGCGGGAAACGAGATGCCGAATAACAAAAAGCAGAAATTAAGTAGTGATGAAAACAGCAACCCCGATTTATCAGGAGACGACAATGATGATGCGGTCAGTGTTGAAAGCGGCACAAACCCAGAGCGGCCAGACACTCCCACGAACACAGCCAATGCCCCGGGCAGAAAGAGCTGGGGCAAAGGCAAGTGGAAGTCCAAGAAGTGcaaatattcctttaagtgtGTCAACAGTCTGAGGgaGGATCACGGCCAGCCGCTGTTTGGAGTCCAGTTCAATTGGAACAGCAAAGAAGGAGACCCGCTAGTGTTCGCAACCGTCGGCAGCAACAGAGTCACTCTGTATGAGTGTCACTCTCAAGGAGAGATCCGTCTGCTGCAGTCGTATGTAGATGCTGACGCAGATGAAAACTTCTACACTTGTGCGTGGACCTTCGACTCGAACACCAGTCACCCGCTGCTGGCCGTGGCCGGATCCCGCGGCATCATCCGCATCATTAACCACATCACCATGCAGTGCGTCAAACATTACGTCGGTCATGGAAACGCGATCAACGAGCTTAAATTTCACCCGAGGGACCCAAACCTGTTGCTGTCGGTCAGTAAAGATCACGCTCTGCGCCTCTGGAACGTTCATACGGACACGCTGGTGGCCATCTTTGGAGGCGTCGAGGGCCATCGTGACGAGGTCTTGAGCGCGGATTTTGACCTGCTCGGCGAGAAGATCATGTCCTGTGGGATGGATcactctttgaaactgtggagGATTAACTCTGAGAGGATGCAGAAAGCCATCCGCGGCTCGTACGAGTATAACCCCAGCAAAACCAACCGGCCTTTCGTGTCTCAGAAGATTCACTTCCCAGACTTCTCCACGCGAGACATTCACAGAAACTACGTGGACTGCGTCCGCTGGCTTGGAGATTTGATTCTTTCAAAGTCATGTGAAAACGCAATTGTGTGTTGGAAACCCGGGAGGATGGAAGATGACATCGACCACATCAAACCCAACGAGTCTAACGTGACCATTCTGGGCCGCTTCGATTACAGTCAGTGTGACATCTGGTACATGCGCTTCTCCATGGACTTCTGGCAGAAGATGTTAGCTCTTGGAAATCAAGTCGGGAAGCTGTATGTTTGGGATCTGGAAGTGGAGGATCCTCACAAAGCGAAGTGTACGACGCTCACGCTGCCCAAATGCACGTCTGCGATCAGACAGACCAGCTTCAGTCGAGACAGCAGTATTCTGATCGCGGTGTGTGATGACGCTTCGATCTGGCGCTGGGATCGTCTGCGCTGATCCTCTCCTGACCTTCGCTGCTCAAATCATTGATCACCGGCTTCTGCTGTCTTCACTTGTCTTTATTCACTTTGCTTTtggcttttgctttttttcgtTTCCATTGTCTTTTGACTGActttaataaaatctatttttctaACCTA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0035098 ESC/E(Z) complex cellular_component

KEGG:

id description
K11462 EED; polycomb protein EED

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1015 lncRNA downstream 65823 2652717 ~ 2654832 (-) True G666
TU995 lncRNA downstream 156245 2562191 ~ 2564410 (-) True G652
TU997 lncRNA downstream 158689 2561355 ~ 2561966 (-) True G653
TU971 lncRNA downstream 161791 2556243 ~ 2558864 (-) True G638
TU1005 lncRNA downstream 168495 2548924 ~ 2552160 (-) False LOC122351916
TU1043 lncRNA upstream 16307 2740227 ~ 2742428 (-) True G681
XR_006251760.1 lncRNA upstream 97268 2821188 ~ 2833731 (-) True LOC122351434
TU1059 lncRNA upstream 342891 3066811 ~ 3070069 (-) True G692
TU1063 lncRNA upstream 388350 3112270 ~ 3120797 (-) False G695
TU1062 lncRNA upstream 392410 3116330 ~ 3120797 (-) True G695
XM_043249739.1 mRNA downstream 512 2717987 ~ 2720143 (-) False hikeshi
XM_043249749.1 mRNA downstream 512 2717987 ~ 2720143 (-) True hikeshi
XM_043236073.1 mRNA downstream 2811 2710717 ~ 2717844 (-) True LOC122342272
XM_043240380.1 mRNA downstream 16388 2700490 ~ 2704267 (-) True LOC122345881
XM_043250896.1 mRNA downstream 92392 2604404 ~ 2628263 (-) True LOC122353060
XM_043235150.1 mRNA upstream 2377 2726297 ~ 2732358 (-) True nfkbiz
XM_043235137.1 mRNA upstream 8926 2732846 ~ 2739589 (-) True cep97
XM_043251484.1 mRNA upstream 412588 3136508 ~ 3284780 (-) True gpc5a
XM_043251495.1 mRNA upstream 478632 3202552 ~ 3284786 (-) False gpc5a
XM_043251462.1 mRNA upstream 971245 3695165 ~ 3701245 (-) False LOC122353624
TU999 other downstream 31191 2688765 ~ 2689464 (-) True G654
XR_006250784.1 other downstream 1115671 1594758 ~ 1604984 (-) False LOC122343438
XR_006252053.1 other downstream 1591018 1129499 ~ 1129637 (-) True LOC122353706
XR_006252043.1 other downstream 2092837 627700 ~ 627818 (-) True LOC122353666
unassigned_transcript_1 other downstream 2281527 439054 ~ 439128 (-) True trnag-gcc
TU1152 other upstream 1283920 4007840 ~ 4014287 (-) True G782
TU1193 other upstream 1574390 4298310 ~ 4299193 (-) True G820
XR_006252050.1 other upstream 3053651 5777571 ~ 5777657 (-) True LOC122353693
XR_006251180.1 other upstream 3122156 5846076 ~ 5853244 (-) False LOC122346875
TU1845 other upstream 3387543 6111463 ~ 6113523 (-) True G1270

Expression Profile