RNA id: XM_043246433.1


Basic Information

Item Value
RNA id XM_043246433.1
length 2489
RNA type mRNA
GC content 0.47
exon number 4
gene id rcan1b
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 1442791 ~ 1455071 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATCAGCTGTTTTGGCCCCTAGTGCAGTCTGTCGCAAGTGTGGACGTCATTTTCGCTTCAGGAATACATCACGGGTTTGCTAGTAACACTATGCAGCACATTGTGCGCTAGAACAGTAGCGTGTGTCAGCTTTGAGGGTTCGGAGACGCTGCTTTTGCAGAAGGTGGAAAGCAGAGCGTGACGCCATGAGCTGAGCGCCGAGACGTTCGAGATCAAAGGCACCGCAGTTGAGATCAAAGGCACCGAGCGCCGCGGTTACATCTGTTGCCATGCAGCAGTCGGAGAGCGGCGGAGGGGCGGCGACTTCTGAAGTCCAGCTCAACGACCAACCCAACGCGCTCATCGCGTGTAAAGTGCCAGAAGAGGTTTTTAATGAGCCGCAGTTAAAGGAGCAGTTTGAAGCTTTGTTCCGTTCCTTTGATCCTGGCACGTCGTTCCAGTTCTTCAAAAGCTTCAGACGGGTTCGGATCAACTTCACTGATGCTCTGGCGGCGGCCGAGGCCCGAGTCAAACTCCATAAGAGCGACTTCAACGGAAAGGAGATGCGTCTGTACTTCGCTCAGTCGGTCCACATCGGCAGTCCTCGTCTTGAGCCTCCTAAACCAGAGAAGCAGTTCCTGATCTCTCCTCCAGCGTCGCCCCCTGTAGGCTGGGCACAGTCGCAGGACGCTACGCCCGTCATCAACTACGACCTGCTGTGCGCCGTGTCTAAACTAGGACCAGGAGAACAGTACGAGCTCCACAGCGGCACCACCAACACCCCCAGCGTGATCGTACACGTGTGTGAGGACGACAGCTCCGAGGGCGAAGACGACACGGCCGACGGCGGCAAGCGCGCGCGGCCCAAGATCATCCAGACCCGCCGCCCGGACTACGTCCCGTCCGTTAACCAGTGAGCGGCTACGTCTGGCCCGCTTCATCTTCGCCAACCAACACCGGGACAACTAGGAAGCGTGCGGTCGTGCAGTTTGTCATCCTCGCCACCGGGGGAGGCCGGCGGGCGCCAGACCCTCTTCCTAGTTAGCGAGGGAGTCGACCATCCTCATAATCTCGCGTTTCATTTCTTAACATCCATCTCCGATGGAGTCAGGGACTCTGAGGACCTGGGGAGGGTTTCTCTCGTCTTACGAATGTCACCGTTTGCTCGACGTCACGactgtgtgttttaataatccCAACGGAAAGATCCGAAGGAGTTTAGTGGCGGCGCCGGCGAACTGAACGCCGTGTCTGAAGTGTGCGTCGTCCTCATCACCTCATTATCACGTATCGTCTCTACGTTTAGTCGGTTAAGCACTCGTGCAGTCTTTGAAcgtcattattattgttgccGAAGTTCTTCACGAGCTCCTCCAAGTATTATGCACTTTAATAATAGAGCCTTATAATGTGGTAAACTGACAACAACATGAAGTACTTGTCTTTGTATATCGGGCGCCGGCTTGGCGACGCGAGCGTTTTCCCGTTCCTTTTCTCCACAATATTCGATTTGATGGGAAGAACggcgttttaaaaaaagacactgaaTTGCGtgcttgtaaaataaaacatcgaCAGCGTGGAGAACATTTTCGATTCCTAGtcaatttgacaaaaaaacccatcttaaatgttaaataaaaatgtttaaataaataaaatggtgcGGACTCAACcatctgtttaatttaattaagttactaaataacttaaagaaaactaatgTGGAGTGATAGCATAGCTGTCtgtaattattaacaaaataaaaatgttattaaacacATATAGCATTTGCACATTGAGAAAGATTTACTCATTGCaacaaacaattacaaagaaaattaaatgagagcattttaagtagaaaaaataactaaaaagtctttttatgttttttttttcccctcaaaatcattcgttttattttacagttacataaTTGGCTGCACGCATTAAAAAAGGTTGACTGTAAATAATTGGATGCATGTATCGAAACGTATATAAAACGCATACGTTGACTGTACACTTCAAACTAAAAGACATAAAGCGTTGTATTAAACGTGAAACTCGTAAGTACGAAGTAATCAAATAAAGTCATCTTCAGCGGCGCACCCGTTACGATCATGATCTTTCTCTGTCCGTCTGCCGCAGAGTTCAGAAATGCAACCGAATTGACGAAAGGAAAAAGCGAAGGGACGTCTCGTAACTAGCCCCATCGCTCGGTCTGGAGAAAATGAATGCGACTCGCTCGATGAAGCGCTCTGTTGTGCTCTACTGTCTTTGGATCTCTTTTCCATTACTGTAGGAGACGTTCTGCCGTCAACCAGTGATTTTAAGCAACTATaacatactgtgtatatttgatGTATTTGAATGTAGCCAATATCTTGAAAAAGCTTGAGGATTTCTATCAACAACCACAACAACTACAAACAATCTTATTCGTTAGCTAGCGAGAATATCGAGGGAGGAGGCATTAACTTACCTTTAATAAAACTATCTTGACCAAA

Function

GO:

id name namespace
GO:0019722 calcium-mediated signaling biological_process

KEGG:

id description
K17901 RCAN1, MCIP1; calcipressin-1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU386 lncRNA downstream 1279 1441088 ~ 1441512 (-) True G260
TU361 lncRNA downstream 96002 1344298 ~ 1346789 (-) True G247
TU355 lncRNA downstream 157982 1282838 ~ 1284809 (-) True G244
XR_006251226.1 lncRNA downstream 179588 1256189 ~ 1263203 (-) True LOC122347488
TU339 lncRNA downstream 230648 1076188 ~ 1212143 (-) False mbnl2
TU436 lncRNA upstream 111967 1567038 ~ 1567532 (-) True G297
TU451 lncRNA upstream 125672 1580743 ~ 1582087 (-) True G303
TU454 lncRNA upstream 128820 1583891 ~ 1584684 (-) True G304
TU515 lncRNA upstream 328124 1783195 ~ 1784512 (-) True G347
TU528 lncRNA upstream 411569 1866640 ~ 1867365 (-) True G358
XM_043247346.1 mRNA downstream 29845 1404578 ~ 1412946 (-) True LOC122350642
XM_043247451.1 mRNA downstream 39967 1392929 ~ 1402824 (-) True atp1a1a.1
XM_043247143.1 mRNA downstream 71804 1364542 ~ 1370987 (-) True LOC122350536
XM_043247230.1 mRNA downstream 71966 1364542 ~ 1370825 (-) False LOC122350536
XM_043247012.1 mRNA downstream 88995 1347494 ~ 1353796 (-) True LOC122350472
XM_043235983.1 mRNA upstream 10366 1465437 ~ 1469101 (-) True urp2
XM_043237908.1 mRNA upstream 136998 1592069 ~ 1604984 (-) False LOC122343438
XM_043237922.1 mRNA upstream 139790 1594861 ~ 1604984 (-) True LOC122343438
XM_043237916.1 mRNA upstream 142140 1597211 ~ 1604984 (-) False LOC122343438
XM_043262113.1 mRNA upstream 150805 1605876 ~ 1612082 (-) False wu:fa56d06
XR_006252053.1 other downstream 313154 1129499 ~ 1129637 (-) True LOC122353706
XR_006252043.1 other downstream 814973 627700 ~ 627818 (-) True LOC122353666
unassigned_transcript_1 other downstream 1003663 439054 ~ 439128 (-) True trnag-gcc
TU105 other downstream 1006666 435808 ~ 436125 (-) True G67
TU47 other downstream 1255706 186420 ~ 187085 (-) True G20
XR_006250784.1 other upstream 139687 1594758 ~ 1604984 (-) False LOC122343438
TU999 other upstream 1233694 2688765 ~ 2689464 (-) True G654
TU1152 other upstream 2552769 4007840 ~ 4014287 (-) True G782
TU1193 other upstream 2843239 4298310 ~ 4299193 (-) True G820
XR_006252050.1 other upstream 4322500 5777571 ~ 5777657 (-) True LOC122353693

Expression Profile