RNA id: XM_043246568.1


Basic Information

Item Value
RNA id XM_043246568.1
length 6277
RNA type mRNA
GC content 0.44
exon number 10
gene id LOC122350229
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 2941770 ~ 3120820 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gagggattGCTACTTTCTCTCCGCTgatagaaacacacagcagaagTTGAGAGCGCGCCGCTCCGGATCTATTCTGGAGGCTTCTCTGCTCTGCTCGCACACGCGTTCGTTCCGAGCGGATCCGTCGGAGAATTCTGCTATGAGCCGGATGCGACAGAAGGCGTGATTGATCATTGATGAGCGATTGCATGATTGAAACATTAGTCCACCTGCAGCTGGAGACGCCGGTGCGCTGAGCGCGTCTTGCGGGTTTTGCGCTTTTACGCATCGGCTGGATTTGCGCGCAGGAGGGATGTTGAAGACACCTGTCGTGGTTTTCACTTCTTTATCGCTGCTGTTGTCGCTGTCATGTGCTGGAGATGTAAAATCGCGCAGCTGCAGCGATGTGCGCCAGGCGTTCACGACCAAAGGCTTCAGTCTCCATAATGTGCCACATCAGGAGATATCAGGTGAACATCTGCGGGTCTGCTCCCAGGGCTACACCTGCTGCACTTCAGACATGGAGGACCGGCTCGGCCAGCAGAGCAAACTGGATTTCGAGAAATTAGTGGAAGAGAACAGCCACACCATTAGGACCATATTTACCTCCAGGCATAAAATGTTTGACGAATTCTTTCTGGAGTTGCTGGACAACTCGGAAAAGTCTCTGAACGACATGTTCGTGCGCACATACGGCAAACTGTACACGCACAACTCGGAGATGTTCGAGGACCTGTTCTCGGAGCTCAAGCGCTACTACACCGGCGGAAACGTCAACCTGGAGGAAGTGCTGAACGACTTCTGGTCCAGACTCCTGGAGCGCATGTTCCAGCTGCTCAACTCTCAGTACACCTTCACAGACGACTATCTGGAGTGCATCAGCAAGTACACCGACCAGTTAAAGCCCTTCGGAGACGTGCCACGCAAGCTCAAGGCTCAGGTCACCAAGGCCTTTATCGCGGCGCGCTCCTTCGTTCAAGGACTCATGGTGGGTCGGGAAGTGGCCAACAGAGTGGCAAAGGTCAATATATCTCCAGGTTGCAGTAAAGCACTGACTAAAATGCTGTACTGTCCGTACTGTGGAGGAATGCCAGGCCTCAAACCCTGCTCCAACTACTGCCAGAACGTCATGCGGGGCTGCCTGGCCAACCAAGCCGACCTGGACCCCGAGTGGAACCTCTTCATCGATGCCATGCTGCTGGTGGCTGACAGACTGGAAGGGCCCTTCAACATCGAGGCCGTCATGGAGCCCATAGATGTGAAGATCTCTGAGGCCATCATGGCCATGCAGGACAACAGCATGCAGGTTTCATCCAAGGTGTTTCAGGGATGCGGTCATCCCAAAGCAGCTGGAGTGGGCCGATCTGCCCGCGGGATCTCGGATGTGTTCAACAGTCGCTTCAGACCCTACAGTCCAGAAGAGAGGCCGACCACGGCAGCCGGCACCAGCCTGGACAGACTGAGGATTGTCTGGAGGACGATGCAAGACAGCGTGATCGACATTAAGGAGAAGCTGAAGGAGTCGAACAAATTCTGGTCGTCGCTGCCAGACGGCATCTGTGCAGAGGACGAAGTGACTGACCCAGATGAGGAGCAGTGCTGGAACAGTCACACAAAGGGAAGATACTTCCCTGAAGTTGTAAAAGACGGCCTGACGAACCAGCTCAACAACCCAGAGGTGGAAGTGGACATCACGAGACCGGACACCTTCATCAGACAGCAGATCATGACCCTGAGAGTGATGACCAACAAGCTGCGAAACGCTTACAACGGCAAAGACGTCTACTTCCAGGACTCCAGTGACGAGGAGAGCGGCTCGGGCAGCGGAAGCGGCTTCACCACGGAGCCAGAAGTGGTCCACACGGAGCCACCGATGCTGGAAGCAGACAAGAGCGACCCTCAGCCCCCGGCAGACGCGGCGGGCCCCCGGCAGACGCCCTCGCTGCGGTTACTCTCCGCCGGAACGGCCCTCAcgtggctgctgctgctgctgcggtgGAGATAATGGCAGGAGGCGGCACGCAGCCACACGGACGCATATGACAGAAGCAGCGTCGCTCGCGCTGTTAGCCTTTCCCTACCTGGACCGGacgttttccaaaaaaaaaaaatagcaagaaAAAGCCCATGAAAAAAGGAGAGCAAGCTAGCTAGCTAGACGTGAAGAGGAAACCTTTGCATCCTGCTTGTTCCAAAGAATGCTTGGTGCAATCAGAAGCCGACTGCTCTCGTTTCTAAATGaagttaaaagaaaagcaaacttTTGGGAAGGAAAAGCGGTCGCCGTGCTAAAGGGGGTCGCTTTTGCCTTTTCGGGAGAGAATGGGGAAATatgaaaatctatttttgttttccttttatacTGCATAAAGCGAGACGACGAAAAtacgctttttgtttttttttttcttttcgttttttttgtttgcgttACGCCCCTCCCGAGTTCATTAAAAGCAGAcgttataaagaaaaaaaaaagtaagaataaaaatctatatgAATCGACTTGTTTATGTACCACTGTGAGAATGCATGGGGAGGTCATGAGTAAATGTTTTCAACTGTGATTTCCACACAATTTTAACGCTTTACTCTTCCGttgaagtgtttttgttgttgttttgctcgGCTGACGGTCGTTTTCTAGGACCTGGGATGGCTTTGGGTGAGCGTGAAGGTCGAGTCTTACAGAGGGCTGCTCCTGCTTGATTCAAAATTAATGATCCATATCTtaatatataaaggttttagttataaaatgttttcttacagagaaagatttatttatatttctaatataattatatattttggctTTACCAGTTAGCAACTTTTATTCGAAAGCGCGTATCTAACAAAACAGCTCTTGCAAAAGAATGATGTTTTTTGCTCTTTCAAACCCAATAATTAATTTAACCaaggtcttttttttgtttcgttgtTTGTTTGGGATGTGCCTGAAACGGgctgctttaaaataactttctgATTTGggatagttttttttctattgaaaaGCCAGTGTTAAACCCGACTGATTCATGTTCCTTACGCTCGTTTATATATTCATCAATGTAATGGATTATGTATGCATAACCCTCATTTACttaacaaccttttttttttcagtttttatatgtAACCCGCCATATCATCGTTTCATGTATAAccatttgcatttacaaaattattttgttgtgAAACAGCAGGCCTCGTTTATGAAACTAAAGCCGGTAGCATTGCATTTCACCCtactgtgaatgggtgccgtcagaatgagtcgaacagctgataaaaacgtgAATGATAACAAGTCATCTTCTCTGAATCTCTGCGCTGTTTACGAGCTGAAACGGtttaaaacagctctaaacaaatatgtgagTGGATATTAATGTGAGAGACAACAGGAGATGTTTTTTTCACTCAAATTTAGTCCTGAAGCAAAGGTTTCGACttaaatgatggatttgtttcttacgaACTAATAGCCTCCCTCTTCACAAGGGCCGGAGTTAtagagatgtttttttatcagctgtttgggctctcgttctgacggcacccattcactgcagggcatCCGTGAAGCAATGCTACATTTATCCAAATCTGTCGAAACATCTACACCCGCTTAATTTTATAACTTtagtttttgagtgaactacgCCTTGATTTTAAACCGCgttcaaaacatatatatatatatatatatatatatacgatttACATTGTTCTGCTTATGTTTCACGAACGAGGCCCATTGAGTCGCTTAGAATGTTATAAGAGCACTTTCTTGGTTTGACTTGTATCTGTAGTTATGAATGTTCCCAATCCAGCGCTATTCAAATACATCGAGCAAACCGACAGAATTAGCGGTTTAATGGCTCAGACCTCCCGTTATGAATGCTGGCATGTGTTAATGTATCGTTTAATGACAGCTTCTCCAAACAACTCTTTGGTTTATGGAAGGACGCCGTGCATTCATCCGGAACCATAAAGCTGCGCTTTATGTTGAGAGCCGCCTGCTCATGCATCACGCTCTTGTCATCACTGAAATGCAAAGATGCTAAAAGATCCTCTAATGTTCTTTTCTCAGAGATGCGTGAAGGTTGAATTAAAGTGCGGGGTGGCGTGTGGAATATAGACGCGCAAACAGCTTCGGAAATGAAACGCGAGAGAGTCCGGCGACGCTCCACTGCGTCTGGTATTTGAAGGCAGGACAGGTAGCAGAAGACGATGTGCTTTTTGCTCATGCCTGGGTACTTTTGTCTTCCCAGAAAGGCTCAGAAAGCATCTCGTGGGTTTTGGAAATGAGAAATTCAGTGAGCCAAGAGAGAGGGCACGTTGAGGAAAGGTCGAACACATAGCTGTgtcttaaagtcaacatgaagtCAGATTTTAAATCCTATTCACTGTAACATCTTCCTAGCCCTTGTGCCGTGCAGAACATCCTAGTTTGGTGTTCCTCATCCAAAAAAACGACATTTGCATTGCTTGTAAATCTGTCACTGTGCTCTATTATCACCAGGGACctcatttagaaaatgttgcGTAGAAACCATGCTAAATGTGATCTTGCGACCATTTTTCGTATGAACGTATAAACGAGAAAACCCGAGTACGCCTCTCTTTCGGGTGTGAAATCTGTTCATCTCAAAGGACCTTGAACTTGCGCGCAAATAAATGGTTTCGGCTCTCCGTCTTtctaattaatgtcattaacgCAAAACCTCACCGATCATCATAATTTGCAGCAGCGAGCGGCAGGAACTCTTTAcgttttcaaaaacctgcaatactCCCAATAAAAAATGCACACGTCTGCTCAGACCCTGACATTGGCGTGGTTTTAAGTATAAGCACACTCTACGATCAAATCTGTGCATGCGCACGCTGTATAAATAAGGCCCTAGATcttatattcaatatttttgccttttttgctttttagcaCAGGTTTGATTGGTTTGGTTGagtaaatattactaaaactacacacaattattttctttttatatatatcatgtttcataaatatgatatttggcataaaataatatgttttttttttttaccatttttacatctattttaaaattgtcGCGCCTAAAAGttatctagttttttttttttgttcggtCGTTTTTTACTTCCTCGTTGAACTTGTTGTGTTCCTGGTCAAAAAAGACTAGCCTACATGAACAGGGACACCTCCGAGTTTAATGAGGagcttaaaggaaaaaacaaaaaactcagAACCGGGAGAGACAATGCTTAAACATTAactttgttttttggtttttggtttttaatcaaattcGCTGCAGGTCAAAATGACAAGAACACAACATAAGGGCTAAAATTCGCTTTAAAATCGTGTTTTTCTCACTTAAAGGGAGCATAATCGGTCaattcatgttgactttaagtgTTAGGTGTGAACGCCGAAGAatgcagaagaagaaaaaaacacaaacggCGTAATTCATGAATGCTCTTCAGACGAAAACTTTACTTCAAGGAAGTCGAAAGTGGTTGAGGGTCTCAAATGGGCTGGTTGCTATATACAGTGGATCACGAAGGGGCAAGTTAACGCAAAAACTGCCGTTTTTCTCTTCCATTGCCCTCCGTTCTCGTGCGCTCCTGTCAGAATCCGAAGACGAAGCATGTCATGTAAAACTTTTCCTAATAGCTTGCGTGTTTCTACTTGTGGTCTGAATGTATTTGGCTTTTCTCTGATGATACCGATTGAACGGTATCGCCTATTTTATCGGTCTCGGAGGATGCGAAGACTAAGCCGTCCATCCGTCAAAACGGACAcgtggtttttattttttcacgtCGTAATGTGTTTGATGGATACAAACCAGATCCAGGCACTCCGAGCGAATCTGTTTCTATGcgttttgctttctttttccaCATTGCACTTTGAAATTGAGTTCCACATTTAGATCTTTATATGAGTGacgaaacaagaaaaaaaaaagaaaaacgtttaCATGTAAACAAGTACAAGCCATGTCAAATACATGTTCGAAACACTTTGAGAAGATTGTGGTCTGAAAGTGAACGTTGTTCCTACTGAAGCACGCTGCTTTGAGCTACTATAGGTGAAGTTTTAATGCGACGTTTATGTCGTGCAAGCAGACATGCcttacagtttgtttgttttcttttttttaaagaaaaaaaaagtactaaatgGATTGCATATTTGGATTTTGTTACTCTCTCATATATACGGACAAGTAATGAAGGggtgcaaataaacattttatatataaaaaaa

Function

GO:

id name namespace
GO:0031225 anchored component of membrane cellular_component
GO:0005886 plasma membrane cellular_component
GO:0043395 heparan sulfate proteoglycan binding molecular_function

KEGG:

id description
K08112 GPC6; glypican 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU796 lncRNA upstream 211050 2726300 ~ 2730720 (+) True G546
TU785 lncRNA upstream 220847 2703522 ~ 2720923 (+) True G538
TU769 lncRNA upstream 314366 2626045 ~ 2627404 (+) True G527
TU722 lncRNA upstream 335693 2603191 ~ 2606077 (+) True G486
TU760 lncRNA upstream 352762 2588687 ~ 2589008 (+) True G518
TU1087 lncRNA downstream 165129 3285949 ~ 3286202 (+) True G719
TU1141 lncRNA downstream 599444 3720264 ~ 3720539 (+) True G771
XR_006250463.1 lncRNA downstream 899277 4020097 ~ 4024338 (+) True LOC122341420
XR_006251095.1 lncRNA downstream 1088589 4209409 ~ 4218600 (+) True LOC122346127
XR_006251103.1 lncRNA downstream 1098422 4219242 ~ 4221288 (+) True LOC122346159
XM_043224891.1 mRNA upstream 159586 2758083 ~ 2782184 (+) True LOC122328837
XM_043235163.1 mRNA upstream 199359 2739677 ~ 2742411 (+) True rpl24
XM_043240364.1 mRNA upstream 241546 2691742 ~ 2700224 (+) True tmem39a
XM_043240370.1 mRNA upstream 241546 2691746 ~ 2700224 (+) False tmem39a
XM_043249376.1 mRNA upstream 251005 2678298 ~ 2690765 (+) True ildr1a
XM_043251222.1 mRNA downstream 683779 3804599 ~ 3817996 (+) True slitrk6
XM_043249780.1 mRNA downstream 886955 4007775 ~ 4011370 (+) True LOC122352357
XM_043236152.1 mRNA downstream 1100463 4221283 ~ 4232503 (+) True LOC122342374
XM_043240733.1 mRNA downstream 1374374 4495194 ~ 4499239 (+) True spry2
XM_043240593.1 mRNA downstream 1427632 4548452 ~ 4554686 (+) True tuba8l2
XR_006252051.1 other upstream 199558 2742079 ~ 2742212 (+) True LOC122353699
TU717 other upstream 345468 2594931 ~ 2596302 (+) True G482
TU696 other upstream 414526 2524525 ~ 2527244 (+) True G474
TU718 other upstream 427911 2511721 ~ 2513859 (+) False pcid2
TU731 other upstream 455782 2483673 ~ 2485988 (+) False grtp1a
TU1095 other downstream 213838 3334658 ~ 3340876 (+) True G727
TU1118 other downstream 515887 3636707 ~ 3699093 (+) True G749
TU1197 other downstream 1235878 4356698 ~ 4357260 (+) True G824
TU1199 other downstream 1237187 4358007 ~ 4358296 (+) True G826
XR_006251076.1 other downstream 1817363 4938183 ~ 4944841 (+) True prkag3a

Expression Profile