RNA id: XM_043246746.1


Basic Information

Item Value
RNA id XM_043246746.1
length 2054
RNA type mRNA
GC content 0.50
exon number 8
gene id f7l
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 2540488 ~ 2544986 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTGTCCGAACGCCCACCGTGTGTCCAGAACACAGCCCATGAGGTACGGACTTTGATCCTGGAGCTAAAACATCATGGAGTTCGACTTGAACATACTGAAGCTCTTCCACGCGATCCTGGCGCTCCTCGCCGTCCCAGCATGCTTTGGGCTTCCATCGGTCTTCCTCAGTAAGTCCGAGGCGAGCCGGGCGTTGACGCATCGAGTCCGACGAGCAAACTCCttcctggaggagctgaagcTGGGCAATCTGGAGAGAGAGTGTCTCGAGGAGATCTGCTCTTATGAGGAGGCCAAGGAGATCTTCACCCTCCCTGAACAACTGGAAGATTTCTGGAGGAGATACACAGAGGTGGATCACTGTGAGTCGGGACCGTGTCGGAACGGAGCCATGTGCGTGGATCAGATCGACACATACATCTGCATCTGTCCGGTGAACTTCGAGGGGAGAAACTGTGACAAAGAAATATTTCCACCCACTTCTTACGGATGTTTGTACAGGAACGGTGGCTGCGAGCACTTCTGTGTAGAAATCAGCGTTTCGACTCATCGCTGTGATTGTGCTCCTGgatacacactacacacagacAACAGCAGCTGTGTGCCGCAGGATGATTTCCCGTGTGGAAGGCTGGTGTACAAGGGCGTTGGTCCGAGGATAGTGAAGGGTGACGTGTGTCCCAAAGGACAGTGTCCGTGGCAGGCTTTACTAGAGCATGATAAACAGTATAAATGCGGTGCCATCATTCTAGACTCCCAGTGGATTCTCACCGCAGCTCACTGCATTTGGGAGAAGGATCCAAACCTTTTACAAGTAACAGTTGGTGAACACATCCGTGAGAAAGACGAAGGAACTGAACAGACGAGGAAAGTGTCTAAAGTCTTCATCCACCCGCGGTACAACCACTCCAGCGCCGACAGCGACATCGCTCTGCTGCGTCTGCTCAGCCCCGTCAGGCTGGACGCCTTCGCCCTTCCCGTCTGCCTTCCTCCCGTTAACGGCACCTTCGGGCGCACCATCGGAGCCATTCGCATGTCCACGGTCAGTGGGTGGGGTCGCCTGGCGCAGTCCGGTCCGCCGTCACCGGTGCTTCAGCGGCTGGAGGTGCCCAGGGTCTCTTTAGACGAGTGCAAGGCTAAGTCGGGTCTGAAGGTGACCAGGAACATGCTGTGTGCCGGCTTCATCGAGGGCGGCCGGGACTCCTGTCAGGGGGACAGCGGAGGGCCACTGGTCACCCGCTACAAGAACACGTGGTTTCTGACGGGGATCGTGAGCTGGGGCAAGGGCTGCGCTCGTTCAGACGTCTACGGCATCTACACAcgcgtgtctgtgtttgtggaCTGGATCATGAAGACTGTAGCTGCCGCATGAAGTCAAGAGTTCCTCAATGAAGGGTGACCACACGTGCCATttttctatattgcctaaaatatctcAGTTTTGCCTTTTTTCGCTTGTGCAGACCATTCTGTGTTTCACATCAGAATATTATGTACAATGCTCGCATGATCATTACCTTCAGGAAGCATGAATacaggaaaacaaaaccaaaacaaatcctGGCAAGGACGTGTATGGGGAAAATCACATGTATGGTCACCCTAATGAATGttgttaaaggtgaagtgtgttaAAGACTTAAAGACTTAAACGAGTCGTTCAAACCAAACAATCTTTCAGTCATTTGTCCTGAAGACAGACACTGTATCCACTGCAGACTAGATAGCAGTCCTTGTGATCTCTATTGGTTTTTGACACAACTCGATTCAGCGACTGACACTTTGACGACATTGAACCGTTTGATCAGCTCGTCATGTCAAGCCAATCACGTGAGTTTGAGCTGGATTTATAATTTTCACCATATAGCATTGATGAGGAAACACAGGCACCGAAAAATCTggttatttttgcaattcagtTTGAtgcacacttcacctttaaagatGCATAAAGGCAGATGTGAGTATAATAATGATGGCAGAACATGATGATATTTATGCCACATATCACTGgaaaatgcacatatattaaGAGAAATAAACTCTTTGAAATGCT

Function

GO:

id name namespace
GO:0007596 blood coagulation biological_process
GO:0006508 proteolysis biological_process
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU988 lncRNA downstream 24313 2515654 ~ 2516175 (-) True G647
TU973 lncRNA downstream 29799 2474322 ~ 2510689 (-) True G640
TU921 lncRNA downstream 160547 2378431 ~ 2379941 (-) True G617
TU847 lncRNA downstream 168737 2369634 ~ 2371751 (-) True G563
TU917 lncRNA downstream 180156 2349200 ~ 2360332 (-) True G614
XR_006251814.1 lncRNA upstream 3938 2548924 ~ 2552261 (-) True LOC122351916
TU1005 lncRNA upstream 3938 2548924 ~ 2552160 (-) False LOC122351916
TU971 lncRNA upstream 11257 2556243 ~ 2558864 (-) True G638
TU997 lncRNA upstream 16369 2561355 ~ 2561966 (-) True G653
TU995 lncRNA upstream 17205 2562191 ~ 2564410 (-) True G652
XM_043246732.1 mRNA downstream 73 2536351 ~ 2540415 (-) True f7
XM_043241463.1 mRNA downstream 5835 2530896 ~ 2534653 (-) True f7i
XM_043241449.1 mRNA downstream 11000 2524609 ~ 2529488 (-) True f10
XM_043246016.1 mRNA downstream 17170 2518723 ~ 2523318 (-) True prozb
XM_043245979.1 mRNA downstream 29158 2499882 ~ 2511330 (-) False cul4a
XM_043248069.1 mRNA upstream 14544 2559530 ~ 2560339 (-) True LOC122351178
XM_043249354.1 mRNA upstream 29756 2574742 ~ 2588258 (-) True pou2f1a
XM_043248783.1 mRNA upstream 44661 2589647 ~ 2597889 (-) True dusp27
XM_043248789.1 mRNA upstream 44661 2589647 ~ 2597850 (-) False dusp27
XM_043250896.1 mRNA upstream 59418 2604404 ~ 2628263 (-) True LOC122353060
XR_006250784.1 other downstream 935504 1594758 ~ 1604984 (-) False LOC122343438
XR_006252053.1 other downstream 1410851 1129499 ~ 1129637 (-) True LOC122353706
XR_006252043.1 other downstream 1912670 627700 ~ 627818 (-) True LOC122353666
unassigned_transcript_1 other downstream 2101360 439054 ~ 439128 (-) True trnag-gcc
TU105 other downstream 2104363 435808 ~ 436125 (-) True G67
TU999 other upstream 143779 2688765 ~ 2689464 (-) True G654
TU1152 other upstream 1462854 4007840 ~ 4014287 (-) True G782
TU1193 other upstream 1753324 4298310 ~ 4299193 (-) True G820
XR_006252050.1 other upstream 3232585 5777571 ~ 5777657 (-) True LOC122353693
XR_006251180.1 other upstream 3301090 5846076 ~ 5853244 (-) False LOC122346875

Expression Profile