RNA id: XM_043247143.1


Basic Information

Item Value
RNA id XM_043247143.1
length 3283
RNA type mRNA
GC content 0.47
exon number 22
gene id LOC122350536
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 1364542 ~ 1370987 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTGgcagaatatatattttgtgaactTGTACCGGTCACACAGGCACTTGTGTCTCCAGAGAGGCCGACTCGACTTCTGACATCTAAGACAGCAGGTTTTAGGGTTGCAATAAACTGGGAAGATGGGGCTCGGCACGGGGAATGATAACTACACGTTGACGGCAACTTCTGAAGATGAAatcaaaaaacccaaaaagggtaaaaaaaagaagaaggatGTGAACGAACTGAAGAAAGAAGTGGAGCTGGACGACCACAAGCTGACATTGGATGAACTCTCTCGCAAATACGGCACTGATTTAAATAAGGGCTTGTCTTCATCCCGTGCAAAAGAGATCTTAGAACGTGATGGACCTAATGCACTGACACCGCCTCCTACGACTCCAGAATGGGTGAAGTTCTGCACACAGCTCTTTGGTGGATTCCAGACACTGCTGTGGTTTGGTGCGTTTCTTTGTTTCACTGCATATGGAATCCAGGCTGCCTCAGAAGAAGAACCAGCGAACGACAATCTATACCTGGGACTCGTGCTTGCCTTTGTTGTCATAGTCAACGGATGGTTCTCATACTATCAGGAATCCAAGAGCTCTAAGATCATGGAATCTTTTAGGAACCTTGTTCCTCAGCAAGCATTAGTTGTGCGTAACGGAGAGAAAAAGGTCATTAATGCGGAGGAGGTAGTCGCTGGGGATCTTGTGGAGGTCAAGGGTGGTGACAGAATCCCAGCTGATCTCCGTATCATCTCTGCACATGGATGCAAGgtGGACAACTCTTCCCTCACCGGTGAATCTGAGCCCCAGACTCGTACTCCTGACTTCTCCCATGAAAACCCCTTGGAAACCAGAAACATTGCATTCTTCTCCACCAACTGTGTTGAAGGTACTGGAAGAGGGATTGTCATCAGCACCGGTGACCATACCGTCATGGGTCGTATTGCATCTCTTGCCTCCAGCCTGGATGGTGGAAAAACACCAATTGCTAAAGAGATCGAGCACTTCATCCACATCATCTCTGGTGTAGCCGTCTTCCTGGGTGTTGCCTTCCTGATCTTGTCCTTGATTCTTGGATACGGGTGGTTGGAAGCTGTTGTTTTCCTTATTGGTATCATTGTCGCTAATGTACCTGAAGGTCTCCCTGCCACTGTAACTGTGTGTCTGACTCTGACCGCCAAACGTATGGCGAAGAAGAACTGCCTGGTGAAGAATCTGGAAGCCGTGGAGACTCTTGGCTCGACCACCACCATCTGCTCTGACAAGACTGGAACTTTGACCCAGAACCGAATGACCGTCGCTCACATGTGGTTTGACAACCAGATTCATGAAGCGGACACCACAGAGAACCAGAGTGGAAACTCCTTTGAGAGGAGCTCTGCTACTTGGTCCACCCTCGCACGTATTGCTGGGCTTTGCAATCGTGCCGTTTTTCGTGCAGAACAAAGCCATCTCCCAATCCTTAGCCGAGACACAGCTGGCGATGCCTCAGAGTCTGCCCTGCTGAAGTGTATTGAGTTGTGTTGCGGTTCAGTCactgaaatgagagaaaagtaCACAAAGATTTGTGAGATACCTTTTAACTCCACCAATAAGTATCAGCTCTCAGTCCACAAGAATCCCAATCCCTCAGAGTCTAAGcacctgctggtgatgaagggaGCCCCAGAGAGAATCCTGGATCGATGCTCTACTATTTTGATTCAAGGAAAAGAGCAGCCTTTGGACGATGAAATGAAAGATTCATTCCAAAATGCCTACGTAGAACTCGGAGGTCTTGGAGAAAGAGTGCTGGGTTTCTGCCACTTTGGCCTCCCTGATGACCAGTTTCCTGAGGGTTTTGCCTTTGATACTGAAAATGTGAACTTTCCAACTGAGAACCTATGTTTTGTCGGCCTCATGTCCATGATCGATCCTCCTCGTGCAGCTGTACCAGACGCTGTGGCCAAATGTCGGAGTGCTGGAATCAAGGTTATCATGGTTACCGGTGACCATCCAATTACAGCTAAGGCTATTGCAAAGGGTGTTGGCATCATCTCTGAAGGCAATGAGACTGTGGAAGACATTGCTGCTCGTTTGAACGTTCCTATTGGAGAGGTCAATCCAAGAGACGCCAAGGCATGTGTGGTTCATGGTGGAGAACTGAAGAACATGAATGAAAGCCACCTGGATGAGATCCTCCAACACCATACAGAAATTGTGTTTGCCAGAACTTCTCCACAACAAAAGCTGATAATTGTGGAAGGCTGTCAGCGACAGGGTGCCATTGTAGCCGTAACCGGTGATGGTGTCAATGATTCTCCTGCTCTGAAGAAGGCTGATATCGGTGTGGCTATGGGTATCGCTGGATCTGACGTATCTAAACAGGCTGCTGACATGATCCTTCTGGACGACAACTTTGCCTCAATTGTCACTGGAGTAGAAGAAGGACGTCTGATCTTTGACAACTTGAAGAAGTCCATTGCCTACACACTGACTAGTAAGATCCCTGAGATGTCACCCTTCCTCATGTTTGTCCTTGTTGGTATTCCTCTACCTTTGGGCACGGTCACCATTCTCTGTATTGACCTGGGCACTGACCTGATTCCTGCTATCTCACTGGCCtatgaaaatgcagaaaatgacaTCATGAAGAGACAACCCAGAAATGCTCAAACAGATAGGCTGGTCAATGAGAGGCTCATCAGTATGGCCTACGGTCAAATCGgtatGATCCAAGCAGTTGCAGGGTTCTTCACCTACATTGTGGTTATGAGCGAGAACGGATTCTGGCCCAGTTATCTGCCAGGACTTCGAGTTGGTTGGGAAGACAGATCTATCAGTGACCTAGAAGATAGCTATGGTCAACAATGGACCTTTGAGGCCAGAAAGATAATAGAGTCCACGTGCCACACAGCGTTTTTCATCAGCATTGTAGTTGTGCAGTGGGGTGACCTGATCATTGTAAAGACCAGAAGAAATTCCATCGTACAGCAGGGAATGAAAAACAAAGTCCTCATCTTTGCCTTTTTTGAGGAAGCTGCTCTGGCAGCCTTCTTGTCCTACTGCCCAGGCATGGACGTTGCCGTCAGAATGTATCCTCTAAGACCATTGTGGTGGTTCACTGCAGTCCCATACTCACTTCTCATCTTCATCTACGATGAAGTTAGGAAATACCTTCTTCGACGGAATCCAGGagGATGGGTGGAAAAAGAAACATACTATTAAATCAAGACGACACTGTATTGCAAATTTATTTCCGAGACATTTTTCTcaattttcagcaaataaatgtgaaattttattaagctgaa

Function

GO:

id name namespace
GO:0048752 semicircular canal morphogenesis biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function

KEGG:

id description
K01537 ATP2C; P-type Ca2+ transporter type 2C

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU361 lncRNA downstream 17753 1344298 ~ 1346789 (-) True G247
TU355 lncRNA downstream 79733 1282838 ~ 1284809 (-) True G244
XR_006251226.1 lncRNA downstream 101339 1256189 ~ 1263203 (-) True LOC122347488
TU339 lncRNA downstream 152399 1076188 ~ 1212143 (-) False mbnl2
TU386 lncRNA upstream 70101 1441088 ~ 1441512 (-) True G260
TU436 lncRNA upstream 196051 1567038 ~ 1567532 (-) True G297
TU451 lncRNA upstream 209756 1580743 ~ 1582087 (-) True G303
TU454 lncRNA upstream 212904 1583891 ~ 1584684 (-) True G304
TU515 lncRNA upstream 412208 1783195 ~ 1784512 (-) True G347
XM_043247012.1 mRNA downstream 10746 1347494 ~ 1353796 (-) True LOC122350472
XM_043248853.1 mRNA downstream 30718 1331683 ~ 1333824 (-) False si:ch211-132g1.6
XM_043248843.1 mRNA downstream 30719 1331683 ~ 1333823 (-) True si:ch211-132g1.6
XM_043248832.1 mRNA downstream 39749 1318790 ~ 1324793 (-) True si:ch211-132g1.1
XM_043246720.1 mRNA downstream 49004 1277500 ~ 1315538 (-) True ptgfrnb
XM_043247451.1 mRNA upstream 21942 1392929 ~ 1402824 (-) True atp1a1a.1
XM_043247346.1 mRNA upstream 33591 1404578 ~ 1412946 (-) True LOC122350642
XM_043246433.1 mRNA upstream 71804 1442791 ~ 1455071 (-) True rcan1b
XM_043246442.1 mRNA upstream 71804 1442791 ~ 1448514 (-) False rcan1b
XM_043235983.1 mRNA upstream 94450 1465437 ~ 1469101 (-) True urp2
XR_006252053.1 other downstream 234905 1129499 ~ 1129637 (-) True LOC122353706
XR_006252043.1 other downstream 736724 627700 ~ 627818 (-) True LOC122353666
unassigned_transcript_1 other downstream 925414 439054 ~ 439128 (-) True trnag-gcc
TU105 other downstream 928417 435808 ~ 436125 (-) True G67
TU47 other downstream 1177457 186420 ~ 187085 (-) True G20
XR_006250784.1 other upstream 223771 1594758 ~ 1604984 (-) False LOC122343438
TU999 other upstream 1317778 2688765 ~ 2689464 (-) True G654
TU1152 other upstream 2636853 4007840 ~ 4014287 (-) True G782
TU1193 other upstream 2927323 4298310 ~ 4299193 (-) True G820
XR_006252050.1 other upstream 4406584 5777571 ~ 5777657 (-) True LOC122353693

Expression Profile