RNA id: XM_043247451.1


Basic Information

Item Value
RNA id XM_043247451.1
length 3483
RNA type mRNA
GC content 0.48
exon number 22
gene id atp1a1a.1
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 1392929 ~ 1402824 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGTGTGCGCGCTGTAACGCGGCTTGGATGCGTGTCCGGTTGGAACGACGCGTCCGGCGGTGaccaaggggaaaaaaaagaccaaaaaaagagGAAACGGGATCGGGgacttttaatttgttgtttttaaagaaagcttggattTTTTTTGGGAAACCCAGGTGGTCGTTTTTTTTTATCGAAAGAAGCAAAATGGGACGAGGAGAAGGACGAGAACAATATGAGCTGGCAGCCACCTCAGAGCAGGGGGCAAGAGGCCAAAGCCCAAGGGCAAGAAAGAGAAGGATATGGATGAACTCAAAAAAGAGGTGGACTTGGATGATCACAGACTGTCCCTGGATGACCTCACCAGGAAATACAGCACCGATTTAACTAGGGGATTGTCAGGCACTCGTGCTAACGAGATCTTGGCGCGTGATGGACCCAATGCTTTGACTCCACCTCCAACTACCCCAGAATGGGTCAAGTTCTGCAAGCAGCTCTTTGGAGGATTCTCAACTCTCCTGTGGATTGGAGCCATCCTTTGTTTTCTTGCCTACGGCATTCTGGCGGCCTCTGAAGAGGAACCTGGCAATGATAATTTGTATCTGGGTATCGTACTCTCTGCTGTCGTGATGATCACTGGATGTTTCTCGTACTATCAAGAGGCCAAGAGCTCCAAGATCATGGACTCTTTCAAGAACCTTGTCCCTCAGCAAGCCTTGGTTATCCGTGATGGTGAGAAGAATAATATCAATGCTGAAGAAGTTGTGGTTGGAGATCTTGTGGAAGTCAAAGGTGGTGATAGAATTCCTGCTGATCTGCgtatcatttctgctcatggatGCAAGGTGGACAACTCCTCCCTCACTGGAGAATCTGAGCCCCAGACTCGTACTCCTGACTTCTCTAATGACAACCCACTGGAGACCAGGAACATTGCGTTTTTCTCTACCAACTGTGTTGAAGGCACTGCCAGGGGTATCGTCATCAACACTGGTGACCGCACTGTCATGGGTCGTATTGCCACTCTTGCTTCTGGTCTTGAAGTTGGTCGCACCCCCATCTCTATTGAGATTGAGCACTTTATCCACATTATCACTGGTGTAGCCGTCTTCCTGGGTGTCTCCTTCTTTATCCTCTCCCTGATCCTTGGCTACACTTGGTTGGAAGCTGTCATCTTCCTTATTGGTATTATTGTTGCTAATGTGCCAGAGGGTCTCCTTGCTACCGTAACAgtGTGTTTGACTCTGACTGCCAAACGTATGGCAAAGAAGAACTGCCTGGTGAAGAATCTGGAAGCCGTGGAGACTCTTGGCTCGACCTCCACCATCTGCTCTGACAAGACTGGTACTTTGACCCAAAACCGAATGACTGTCGCTCACATGTGGTTTGACAACCAGATTCATGAAGCGGACACCACAGAGAACCAGAGTGGAACCTCTTTTGACAGGAGCTCTGCTACTTGGGCCGCCCTTGCACGTGTCGCCGGTCTCTGCAACCGTGCCGTCTTCCTTGCTGATCAAGAAAGCATCCCAATTCTTAAGAGAGACGTGGCTGGTGACGCCTCAGAATCTGCCCTGCTGAAGTGTATTGAGCTCTGCTGTGGATCGGTgaaagagatgagagagaaaTACAACAAGATTGCTGAGATTCCATTCAACTCCACCAACAAGTATCAGCTCTCCATCCATAAGAACCCCAACAGCAATACAACAGAATCCACTCACCTGCTAGTAATGAAAGGCGCTCCTGAAAGGATCTTGGACAGGTGCAGCTCTATTTTGATCCAAGGAAAAGAGCAGCCGCTTGATGATGAGTTGAAGGATGCCTTCCAGAATGCCTACTTGGAACTTGGGGGCCTTGGAGAAAGAGTATTGGgattCTGTCACTTCAACCTTCCTGATGAACAGTTTCCTGAGGACTTCCAGTTCGATACAGATGAGGTGAACTTCCCCACTGAGAACTTATGCTTCATTGGCCTTATGTCCATGATCGATCCTCCTCGTGCTGCTGTACCAGATGCCGTGGGCAAATGTAGGAGTGCTGGAATCAAGGTTATCATGGTTACTGGTGATCATCCAATCACAGCCAAGGCCATTGCCAAAGGAGTGGGTATCATCTCTGAGGGCAACGAGACTGTTGAAGACATTGCTGCCCGCTTGAACATTCCTATTAATGAGGTCAATCCAAGggatgcCAAGGCTTGCGTGATCCATGGTGGTGACCTGAAGGATCTGACCCCAGAGCAATTAGATGATGTCTTGAAACACCACACAGAAATTGTGTTTGCCAGAACGTCTCCTCAGCAGAAGCTGATTATCGTTGAAGGCTGCCAAAGACAGGGTGCCATTGTAGCCGTAACCGGTGATGGTGTCAATGATTCTCCTGCTCTGAAGAAGGCTGATATCGGTGTGGCTATGGGTATCGCTGGGTCTGACGTATCTAAACAGGCTGCTGACATGATCCTTCTGGACGACAACTTTGCCTCAATTGTCACTGGAGTAGAAGAAGGCCGTCTGATCTTTGACAACTTGAAGAAGTCAATTGCCTATACACTGACCAGCAACATCCCTGAGATTACCCccttcctcctcttcatcattGCCAACATCCCTCTTCCTTTGGGAACAGTCACCATTCTTTGCATTGACTTGGGTACTGACATGGTTCCTGCCATCTCATTGGCCTATGAAGCTGCTGAGAGTGACATCATGAAGCGTCAACCTAGAAACCCCAAAACGGACAAACTTGTGAACGAGAGGCTGATTAGCATAGCCTATGGTCAAATAGGTATGATTCAAGCTCTGGCTGGGTTCTTCACATATTTTGTCATCTTGGCTGAAAATGGCTTCCTGCCGTCGTCATTGCTGGGCATACGAGTGTTATGGGATGATAAACACGTCAATGACCTGGAGGACAGTTACGGCCAGCAATggACATACGAGCAAAGGAAGATTGTGGAGTTCACATGTCACACGGCCTTCTTCACCAGTATTGTGATTGTACAATGGGCCGATTTGATCATCTGCAAGACCAGAAGAAACTCTGTCTTCCAGCAAGGAATGAAGAATAAGATTCTCATCTTTGGACTGTTTGAAGAAACCGCTCTTGCAGCTTTCCTGTCCTACTGCCCAGGCATGGATGTTGCCCTCAGAATGTACCCACTAAAACCAAACTGGTGGTTCTGCGCCTTCCCCTACTCACTCCTCATCTTTATTTATGATGAAATCCGAAAACTTATCATTCGACGCAGCCCAGGGGgTTGGGTGGAGAGGGAGACCTACTATTAAAGCATCCAGTCTGCATCACAAGTTTATTTGCATGGTTGTCTCGCTGCTCGGAATTTTAACCTCAGtaatttggatgtttttataTAGGGAATGCTTGATACAAACACCGAGATCGTGAACCAAGACATTGCGTGCCTTGTTTCTGAAGCCGGACCaattttatacatgtttttaaaagtgtaatataaaaataaacttgcagTCAGGTCCCA

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0003143 embryonic heart tube morphogenesis biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0035051 cardiocyte differentiation biological_process
GO:0010172 embryonic body morphogenesis biological_process
GO:0048840 otolith development biological_process
GO:0060974 cell migration involved in heart formation biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0030916 otic vesicle formation biological_process
GO:0030917 midbrain-hindbrain boundary development biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005391 sodium molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K01539 ATP1A; sodium/potassium-transporting ATPase subunit alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU361 lncRNA downstream 46140 1344298 ~ 1346789 (-) True G247
TU355 lncRNA downstream 108120 1282838 ~ 1284809 (-) True G244
XR_006251226.1 lncRNA downstream 129726 1256189 ~ 1263203 (-) True LOC122347488
TU339 lncRNA downstream 180786 1076188 ~ 1212143 (-) False mbnl2
TU386 lncRNA upstream 38264 1441088 ~ 1441512 (-) True G260
TU436 lncRNA upstream 164214 1567038 ~ 1567532 (-) True G297
TU451 lncRNA upstream 177919 1580743 ~ 1582087 (-) True G303
TU454 lncRNA upstream 181067 1583891 ~ 1584684 (-) True G304
TU515 lncRNA upstream 380371 1783195 ~ 1784512 (-) True G347
XM_043247143.1 mRNA downstream 21942 1364542 ~ 1370987 (-) True LOC122350536
XM_043247230.1 mRNA downstream 22104 1364542 ~ 1370825 (-) False LOC122350536
XM_043247012.1 mRNA downstream 39133 1347494 ~ 1353796 (-) True LOC122350472
XM_043248853.1 mRNA downstream 59105 1331683 ~ 1333824 (-) False si:ch211-132g1.6
XM_043248843.1 mRNA downstream 59106 1331683 ~ 1333823 (-) True si:ch211-132g1.6
XM_043247346.1 mRNA upstream 1754 1404578 ~ 1412946 (-) True LOC122350642
XM_043246433.1 mRNA upstream 39967 1442791 ~ 1455071 (-) True rcan1b
XM_043246442.1 mRNA upstream 39967 1442791 ~ 1448514 (-) False rcan1b
XM_043235983.1 mRNA upstream 62613 1465437 ~ 1469101 (-) True urp2
XM_043237908.1 mRNA upstream 189245 1592069 ~ 1604984 (-) False LOC122343438
XR_006252053.1 other downstream 263292 1129499 ~ 1129637 (-) True LOC122353706
XR_006252043.1 other downstream 765111 627700 ~ 627818 (-) True LOC122353666
unassigned_transcript_1 other downstream 953801 439054 ~ 439128 (-) True trnag-gcc
TU105 other downstream 956804 435808 ~ 436125 (-) True G67
TU47 other downstream 1205844 186420 ~ 187085 (-) True G20
XR_006250784.1 other upstream 191934 1594758 ~ 1604984 (-) False LOC122343438
TU999 other upstream 1285941 2688765 ~ 2689464 (-) True G654
TU1152 other upstream 2605016 4007840 ~ 4014287 (-) True G782
TU1193 other upstream 2895486 4298310 ~ 4299193 (-) True G820
XR_006252050.1 other upstream 4374747 5777571 ~ 5777657 (-) True LOC122353693

Expression Profile