RNA id: XM_043247627.1


Basic Information

Item Value
RNA id XM_043247627.1
length 7060
RNA type mRNA
GC content 0.45
exon number 15
gene id gli3
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 210723 ~ 361603 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACAGGGAAAGGGCAGCTGGAGCTCCACACTTCAAATCTTCTTTACCCGAGAAACTCTGCATTACAGTCTTTGTGATAAACAAGTTTCACGAGTCGCTTTACTTTTGTGTTTAGGCTTTAGGTATGTAGGCAAAGACTGGGCGCTAGTTCAGTGCTGGGCTGCCCTTGCCAAGCGCACGtaggaaagaagaagaagacaactaaaaaatgaaaagtcatcAGAGCAGTTTTGGAGTTTAAAGTGAAGAAGCTAAGAGTGTCTGTCAGCAACTAACATCTGCACGCGAGCGAGAAGAAAGTCTGTGAGGAGAGGAAAGAAAAGTTTCGCAACAGAACGAGTATCCTGTCTTGATGAGGTACTGAGGAATGCGCATTTGTCATGGAAACTCAGTCCCAGACCAGTTCTGcagcagagaaaaagaagagagtGGAGACTATTGTAGCTGCCAAGAGCGTGCCCACCCGTGCAGAAGTCAGTGAAAAGGCTGTGGCTTCCAGCACTACCTCCAATGAGGATGACAGTGGTTCCCCATATCATCGTGAGAGGCGTAATGCCATCAGTGGGCAGGCTGTGGTTCTGGGCATATCAGGAAAACTTAGTGAAGAGCCATCAACGTCTACAGAAGAACGCCCCCCATTAGTGAAAAAAGAGCTTCACAGTTCTCTGCCCCACCTGGCAGACCATACCATGCCCTATCGAGGGACACTGTTTGCCATGGACCCTCGCAATGGATACCTGGACCCTCACTATActacACCTCAGTTCTTTCCTGCTTTTCATCCTCCAGTACCAATCGACGACAGACATACACAAGGCCGGTACATTTACGAACCCTCTCCAGTACCTCCGCTACACATGCCTCCTGCACTGGCGGCCAGCCCGGCATTTTCTGATATCTCCCTCATCCGGATCTCACCACATCGGAACCCTTCCGTGGGGGCGGAGTCACCCTTTAACCCCCCACATCCATACATTAACCCCTACATGGACTATATCCGCTCTCTGCACAGCAGTCCCTCTTTGTCCATGATCTCTGCAGCCAGAGGCCTCAGTCCTGCAGATGCACCCCACACCAGTTTGACCACGGCTGAGTACTACCACCAGATGGCCCTACTTGCAGGTCACCGCAGCCCTTATGCTGACATTATTCCCTCAGTGGCATCTGCAACAGGGCCTACAAGTAGTGCCCTGCATATGGAGTACTTACAGGCTATGGAAACTTCACGCTTTCCAAGTCCTAGGCTCACAAATCGGCCCAGCAGAAAACGACCCCTTCCCAGCTCCCCTTCCCTTTCTGACCCCAGTTTTGACCTGCAGGCCATGATTCGCACTTCACCCAACTCTCTAGTCACTATACTTAATAATTCCCGCTCCAGCTCTTCCACTAGTGGATCCTATGGACACCTCTCAGCTGGTACTATCAGtccTGCACTGAGTTTCGCATATCCTCCAACACCTGTGGCACTGCAAATGCATCAGCAGCTGATCAGTAGGCAACCGGGCATCGTAGGTTCTGCATTTGGACATAGTCCACCCCTTGTGCACCCAGCTCCTGCCTTTGCCACCCAGAGACCAGTTCCTGGCATTCCTCCTTCCACCCTGCCTCCTACAGAACGTTCCACAACCTCAAATGACTCACAGAGTAAACCCACCAGCGAATCGGCTGTGAGTAGCACAGGGGACCCCATGCAGCACAAACGATCCAAACTCAAACCAGATGAAGAGCCACCCAGCCCTGGAGCCATTAGCGTGCAGgAGCAAACGGATGGAATGACACTTGTGAAAGAAGAGGGTGACAAAGAGGAGGGCAAGCAGGAGCCAGAGGTGGTGTATGAGACCAATTGCCACTGGGAAGGTTGCTGCAGGGAGTTTGACACCCAAGAGCAGCTTGTGCATCATATAAATAATGATCACATACATGGAGAAAAGAAGGAGTTTGTGTGTCGTTGGGAGGAATGTTCAAGAGAGCAGAAACCGTTTAAGGCCCAGTACATGCTTGTAGTGCACATGCGCAGACATACAGGAGAGAAGCCTCATAAATGCACGTTTGAAGGCTGTTCAAAAGCCTACTCCAGACTGGAGAACCTGAAGACACATTTGCGTTCACACACAGGAGAGAAACCATACGTGTGTGAACATGAAGGCTGCAACAAAGCCTTTTCTAATGCGTCAGACAGAGCCAAACATCAGAATCGCACACACTCCAATGAGaAACCCTATGTGTGTAAAATCCCTGGTTGCACTAAACGATATACTGATCCCAGCTCTTTACGGAAACATGTTAAGACTGTACATGGTCCTGAAGCACATGTCACCAAGAAACAGCGTGGGGATACATACCCGCGTCCCCCACCTCAGCCTCGAGAACCAGAAGGTAACGGACAAGGTCAGTCTCCTGGACAACTGCCTCTCAGAGCGATCACTGACCAAAGGGAGTATAACCATGCTACCTCAAAACAGGACGAATGTCTACAAGTAAAGTCAATCAAAACTGAGAAGCCCATGGCGTCTCAGCCAAGCACTGGCGGTCAGTCTTCATGCAGCAGTGACCAGTCCACCAGCGGCCCCCATACCGGCCGTGGAGTCCAGCTTGCTGTGAACAGTATTGTGCTTGTGGGGGAGGAGCCAGTGATTGAGGACCAGGCAAATGaagaaaaggaggaggaagGGGAGGGAGAAGAGGAGGATGCCCCCATTATGGACTCTACAGTATCCACTGCAACAACCACAGCGGCAACACTAGCTTTACAGACTCGTCGAAGTGTAGGACGGCCCCTACGCTGGATAGAGCATGTTAAGATGGAGAGGTTAAGGCAGGTGAATGGAGCTGTGCCTAGGCTAGGACATATGTCCCCAACACCGCCCCCTAAAGGCCAGGCCCTGCCTGCCCTGACAGGAAAGGGTTTATGCCTTGGTAGGAGTAGTTCTGTGGGGGTTCCCCAGCCTCCTCCACATCTTGAGCCATCTAACACAGAGCTGATGGTGTTAAATTTGCTGCATGAACGCCGGGACAGCAGTGGCAGCAACACCAGCTCGGCCTATCTGAGCAGCAGTCGTCGATCCTCTGGCATCTCCCCCTGCTTCTCCAGCCGTCGTTCTAGCCAGGCCTCACAGTCTGAGCACAGCCACCATCGGCATATTCACAATCTCAGTTCCACTGACTCTTATGACCCTATCTCCACTGATGCCTCACGACGCTCTAGTGAAGCCAGCCAATGTGGAGGTGGAGGAAGTTCAGGTGGGATGGTGTACAGTGGTATTGGAGGATGTGGAATAGGGGCAACAGGTGTTCTCAATCTCACTCCGGCTCAACACTATCACCTGAAGGCCAAGTATGCCGCTGCTACAGGTGGTCCTCCTCCCACACCCTTGCCAAACATGGAGAACATGAGCTTAAAATCTCGTCTGGCTTTGATGGAAGATAAACAGAACATGGGCCAAATTACACTACCACCACTGGTCAGGCCACGTCGCTGCAGTGATGGTATGCACAACTTACATAGCAGTCAAGCATTGTATCAACGAAGGGGGCTGTACTCTGTTGAAGGTTCAGGGAATAGTGATCGAAGAGCCAGTGACCCTGTGCGTACACGTGAAACTAGCACTTTTGGTTTGCCACAGTTACAGCGTTTCAGCAGTTTAAACAGCATGAATTCATTACCCCATATTGCTGGTAATCATTATTTAGATGGAGAAAATAACAGTCTGAGTTTCCAGAACTACATCTTTCAGAGAAGTCTACACTCGCCATGTCCTCCCAGCATCATGGAGCAATCAGCACTTGAGGACTTGGCAATGGACCAAGAAGGTCTTCAGTTACATGCTGATGAAGACATTCTGCCAGATGACTTGGTGCAATATCTTCATTCACAAGATCAAGAATCGGATCACAACCAAGACAACCACAGCAGTGATTTCAGTCCCCATAGTTTTGACCAGGGTACTGAAGATGTCCAGAACAACCTCAatccacaacaacaacaggaaAAGACAGAAGAGGAAAGCACTAGTAAGGATATAATGCCTATACAGTGGAATGAAGTGACCTCTGGTAGTGCTGATGTTTCTCCTCCCAGGCAGCAGTCTCAGAGGTGTGGAAGATGGTCAGACCACAGTGGCATAGTGAGAAGCGCCTTTGGTTGCTTTGGAAACATGATTGTGCAGCAACAACTGCATACAGAGTTCATGGATCAACACTCTTCCCTTTGTAGAGATGGTGTCGAGCAAATGGCAGGTATGAATTACAGATGCATACAATCAGAGCAGCATCAACAAATAGAGAAGCCATCCCAACAACGGCCCAGAATAAATCCAGTCATTAAGAACGAGTCTTCAAACTTCAAACTGGAATCAAGGCCCAACAACTTCTCTCATATCTCTTTGGGCCCCCTCCATCCTTGCAGTACCCAGCAGACAACTATATCTCAAAATAACCTCAagcaaattcaaacaataacacATCAAATCAGCAGCAACCTTTTGTTGCAAAGTCCACCTAACTGCAGCTGGTCTCCAGCAACTCTTCTGCCTCACCAGGTCCAACATCCTATGACTCGCCCACCTGTCAATAGCGGCCATAGAGGCTTACATCACACACAACCCTACTTCATTCAGCAGGTTATTAATGATCATAATGCACATTCATGCCAGCAGCAAAGCTTGAGAAATGGAAATGGAACCAATTGCCCTCTTGCAAATCAGGTTTCAGGACTTAAGCTTGAGGCAGATGACTGCATTCAAACCAACACTTGCTCTTCTATCCAGCGACAAAAGCCTGTGTTTATTGCTGAGTGTTTTGACACGTTTAATGATACAGCACAGTCATATTTATCAGGGTCCTTGACAGCTGAGATAGAAACACCTTCTGAGGCTCTTCTGTCCCCTGGGGTAGATCACGTGACCAGTACAGTAGAAGAAAGCCTAGGTGTCATAGATAATGTTGGTTTAGATATTTGTTCCATCCTTGAGGATGGTTATGAGCTGGGTACTGAGGTGTCTGACATAATCAGTCCCAGTTTTTTCCAGGGTCTGTCTAGAACTCCCTCTCGGCTGACTACTCCCCGTGTTTCAGCTCCATTTCATCCCGGTATTAACAACATGGCTATTGGTGACATGAGCTCCCTCCTCACCACCCTTGCAGAAGAGAGCAAATTTCTGGCTATTATGCAGTAACCTGTTGCTCTCCCCCTCCAAACAATTGTTACACTGTTAtagataaaatgcatttaacagaCTTGTGTATGTAATGTAAAGGGATGAGAAAGAAAATTATTgcttcatatttattaaaatagtttattaggTAATGTTGACAAAGATTTGGTACACAGTCTTAAATCTGTCTTATCTTCCTAGTGGCAGTTACCAGTAGAACCATTCCATTTCTGGAACAGAGGCTATTTTAAAAGCCCttcttttatattgttatatgaAGATGACAGGTGGAAACACTGGTCGTCTTTTCATCACACTGAAACAGTATTCTCCttgttgttgttgatatttttatgttttgttgtaCATTGTAGCTACAAGTGCatgatgattttattaagtatacaCAGTGTTCACAAAAACCGAGTAGGTTAACTCATTGTATTATGTATCTTTGTTGTTGAGTTCATTGCATACTACAAAAAGGTGTGAATGTACACATACCCGACTGTCATCAGTTCAATTCATTGTGGAATATCACTCCTAACAGGCCCACATGTCATATTTTGattattctaaatgtcttttaagTATCTTAAGATGTTGCAGTGATTATAAAATAAGTCTTACCAAAAATGTTGCTGACCAATTTTTTCCCAAAATAGCAATTAAGAGGGACCACTATGTTGTGTAAGGGTATGACAAGTGTAGAGCAAAATGCTACAGCTGATCACTTAATATCTTGATTATATTGACTGTATCATTGtacataaatgttaatatttttcattttttatatagcaaatatttacattttgcatcATTTTGATCATATTGTTAATGACTGGTGCTGCTGTTAAGCAATGCATtacacaataaacaaaaaaaaatattgtggtAATTTTAGTGAATCTAAACATGTTGCTTATTGCacacatattgttttttaatttgtggcCAAAATGTGTTGACAGCAATGGTAtcaattaatgtttaaatttatctaaatataccagtaattttatttgttatctTGTTTACAACCGTCAGttgtgtgctgtttttgtcACAGCAGTACAGTGAATCTGTAGTGAGGTCTCATTTATGCCATTTCTTTTTAGGTCAACCTGTCTTTgcttaactattaaaaaaccTCTACCTTCATCACTGCGAAATAAGGAAATGTATAAACACCAAGAGACAACATGCTCCACTACAATAGCTGAGAGGCTTTTAgcagtattaaaatatattgcagtTTCTACCTGCAtatgtacagtttttaaaagtgtactcTTGTAATTaggttctgtttgtttttgtatggtTATTTGAAAAATTACTGTAGTTGTGTATCagcattttttaagttttaaacacAGAAATGGTATGACCTATTCCTCTTTAAAAGGACTAGAGGCTTTAAGCCTAAGGTGTGTGCCTTATTAATGCTCGTCCATACAAAAGAGACACTGCCATTTtcttcttccttccttccttttttaaggaaataaagagaaataaattgTGTATGGAAAGAGTCCTGCGATTTCACATGTTACATGGAACACTACATTCTGTTGGTTGGGCATTGAGAAATGTGATGTGTAAGCAATGTTAgttgctttgttgttgtttttaatagttattacatttgtttttatgcttgtaaatacatattcattCTGTAGACTGTAGTTAAGAGTTTAGGTGGCATCAGGCTCAGAATTAGTATAAGTATCCTACTCTATTAAGCATTTACATTCAAACAGGTGATCAAAGTAGAATCATGGTGCATAGCACTCTAGACTGGGAACAAAGTGTGAAGGCTCTTTTTATATgagattaaaacaaatgtttgtatggttttaataaaaaaataaaataaaaaaaataaatacaaca

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K06230 GLI3; zinc finger protein GLI3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46 lncRNA downstream 32522 177676 ~ 178201 (-) True G19
TU45 lncRNA downstream 44396 166097 ~ 166327 (-) True G18
TU20 lncRNA downstream 158135 52167 ~ 52588 (-) True G6
TU19 lncRNA downstream 162196 47787 ~ 48527 (-) True G5
TU86 lncRNA upstream 31696 393299 ~ 393852 (-) True G56
TU104 lncRNA upstream 60529 422132 ~ 422409 (-) True G66
TU108 lncRNA upstream 80276 441879 ~ 442209 (-) True G70
TU110 lncRNA upstream 85905 447508 ~ 447882 (-) True G72
TU111 lncRNA upstream 86725 448328 ~ 448640 (-) True G73
XM_043238439.1 mRNA downstream 5164 193211 ~ 205559 (-) True prpf4bb
XM_043241388.1 mRNA upstream 43079 404682 ~ 408086 (-) True ccr9b
XM_043249769.1 mRNA upstream 61297 422900 ~ 433678 (-) False lztfl1
XM_043249768.1 mRNA upstream 61297 422900 ~ 433678 (-) True lztfl1
XM_043235838.1 mRNA upstream 376534 738137 ~ 745984 (-) True LOC122342053
XM_043235840.1 mRNA upstream 404623 766226 ~ 826226 (-) True LOC122342059
TU47 other downstream 23638 186420 ~ 187085 (-) True G20
TU105 other upstream 74205 435808 ~ 436125 (-) True G67
unassigned_transcript_1 other upstream 77451 439054 ~ 439128 (-) True trnag-gcc
XR_006252043.1 other upstream 266097 627700 ~ 627818 (-) True LOC122353666
XR_006252053.1 other upstream 767896 1129499 ~ 1129637 (-) True LOC122353706
XR_006250784.1 other upstream 1233155 1594758 ~ 1604984 (-) False LOC122343438

Expression Profile