RNA id: XM_043247680.1


Basic Information

Item Value
RNA id XM_043247680.1
length 1803
RNA type mRNA
GC content 0.47
exon number 11
gene id jam2a
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 2224089 ~ 2235491 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

acacacacacacacacactgtctctctctcacacacacacacacactctcagagcGCGTCGCTGAGTCGAGGATCTCCGGACGAACGCGTTTCTTCGAGCTTCTTCTTCGGCGGACTCCTCTGGAAAGTTTCTCGGTTCGTGGATGAAATGTTTGTTTCGGCGGCTTTGCTGATTTTAATTCAGAgCGTGGTCGTCGTCGTCGCCGTCACCGTCACCAGCCACACTCCTGTAGTGAATGTGCATGAGTTctcagATGCTGAGCTCTCCTGTGAGTTCAGGACTGAAAACGACAAGACTCCTCGCATCGAGTGGAAGAAGATCGACAAGGATGTGTCCTTCGTTTATTATGACGGCCGTTTTGTCGgaccGTTCCACGGCCGCGGGGAGATCAGGGGTGCGACGGTGTTTTTGCACAAAGTGACTCAGAGCGACGCGGGCAAATACCGCTGTGAGGTCAGCGCTCCGCAGGACTCCGTGTCTCTGGGAGAGACCAACGTCACGCTCACAGTGCTGGTGCCTCCGCACACACCCTCGTGTGACGTGCCCAGCTCGGCTCTGACGGGCTCTCTGGTGCAGCTGCGCTGTAGGGACCGTCACAGCATCCCGGCCGCCGTCTACACCTGGTTCAAAGACAGCCGCGCTCTGCCCATCCAGCAGCCCAACGCCACATACACCATCGACGAGAAGACCGGCGTGCTGACATTCCAGAAGGTCAGCAGAGACGATACGGGTCAGTATCACTGTGAGGCCAGAAACGGTGTGGGGCCCGGAAAGAGCTGCTTGGGGACACGCATGCAGAtcgATGATCTGAACGTGGCGGCGGTGGTCTGTGGAGTGCTTCTTCTGGCTCTGctgctgtttctgtgtgtgttcgGAGTGTTTTACGCTCATCGACACGGACTCTTCAGCCGACACAGAGGaagGTCGTTCTGGATCCCGCAGTGTCACGGCGCTGCTCACATTAGCAGCCAGAACCTCCATAGAACCGAGCACACTCAAAATTCAGGCTACAGTCATCCTCCCAAAGAACCTCAGGACTTCAAGCACACTCAGTCGTTCATGCTGTGACGGACGGACGGAGATTATGAATGTGACACTAGAAGAAGCGTATGAACTGAGCGGCAGTGATCCTCTGGACCTGGTCTGGTCTGGTTTTGCTGGCGGAGCAGCGACCGAAGCCTTAAACCGGTCTGAGCTGACCTTCCTCACGCTGTGCCTTCCTCCACCCAATCATGTCTGTATCTACTGAGCGTGAAACGGACTCCATTCTTGTGTATGTTATCAGTATTTgtgcgtttgtttgtttggttttttttttaataaaaataccttttttctGATTTGATCTGAActggaacatttatttgatgctGATTCAGAAGAAATGAAGACATGCTGAATTAATGATAATAGAGATTAAAGCTTTACAGCTAGGCTTCATTTATTATGCTTTCACAAAGTTTgttcttaatatatattttgttgtatttgttcACATTAACTACACTGAACTAAAaccttctcttctctttcatcAGACTGAATGTTGAAATATAATCAACTAAagatgtaaagtttttttttttatgtcacaaaTAAAAGCCTCAATTAAATGTTCATCACTGAACTGGATTttacaaataacttttttaagcTTCAATGTTTGGACAAAGTGTATTTTAATACTAGTTTGTTTACACTCTTTAGttcaatgtatatttttataatttgtcttttttgtaaGTAGTTTTAATTCTACTTtcatttgatgaataaaagatgTAAAGCTTGTTAAACATTGA

Function

GO:

id name namespace
GO:0007520 myoblast fusion biological_process
GO:0005515 protein binding molecular_function

KEGG:

id description
K06735 JAM2, CD322; junctional adhesion molecule 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU812 lncRNA downstream 4360 2188501 ~ 2219729 (-) True G554
TU811 lncRNA downstream 4360 2199193 ~ 2219729 (-) False G554
TU903 lncRNA downstream 9178 2214345 ~ 2214911 (-) True G600
TU854 lncRNA downstream 20171 2191833 ~ 2203918 (-) True G567
TU879 lncRNA downstream 50424 2169955 ~ 2173665 (-) True G584
TU906 lncRNA upstream 9848 2245339 ~ 2246590 (-) True G603
TU837 lncRNA upstream 57433 2292924 ~ 2293517 (-) True G559
XR_006251541.1 lncRNA upstream 98851 2334342 ~ 2342289 (-) True LOC122349938
TU917 lncRNA upstream 113709 2349200 ~ 2360332 (-) True G614
TU847 lncRNA upstream 134143 2369634 ~ 2371751 (-) True G563
XM_043235994.1 mRNA downstream 68146 2151651 ~ 2155943 (-) True LOC122342174
XM_043239674.1 mRNA downstream 255227 1962314 ~ 1968862 (-) False n6amt1
XM_043239665.1 mRNA downstream 255227 1962314 ~ 1968862 (-) True n6amt1
XM_043239683.1 mRNA downstream 256978 1962314 ~ 1967111 (-) False n6amt1
XM_043258475.1 mRNA downstream 612015 1605876 ~ 1612074 (-) False wu:fa56d06
XM_043245035.1 mRNA upstream 3647 2239138 ~ 2244571 (-) True mrpl39
XM_043247959.1 mRNA upstream 25226 2260717 ~ 2267466 (-) False LOC122351091
XM_043247968.1 mRNA upstream 25226 2260717 ~ 2267400 (-) True LOC122351091
XM_043236686.1 mRNA upstream 32771 2268262 ~ 2271714 (-) True mrpl16
XM_043236695.1 mRNA upstream 38882 2274373 ~ 2276353 (-) True txnl4b
XR_006250784.1 other downstream 619105 1594758 ~ 1604984 (-) False LOC122343438
XR_006252053.1 other downstream 1094452 1129499 ~ 1129637 (-) True LOC122353706
XR_006252043.1 other downstream 1596271 627700 ~ 627818 (-) True LOC122353666
unassigned_transcript_1 other downstream 1784961 439054 ~ 439128 (-) True trnag-gcc
TU105 other downstream 1787964 435808 ~ 436125 (-) True G67
TU999 other upstream 453274 2688765 ~ 2689464 (-) True G654
TU1152 other upstream 1772349 4007840 ~ 4014287 (-) True G782
TU1193 other upstream 2062819 4298310 ~ 4299193 (-) True G820
XR_006252050.1 other upstream 3542080 5777571 ~ 5777657 (-) True LOC122353693
XR_006251180.1 other upstream 3610585 5846076 ~ 5853244 (-) False LOC122346875

Expression Profile