RNA id: XM_043248069.1


Basic Information

Item Value
RNA id XM_043248069.1
length 577
RNA type mRNA
GC content 0.60
exon number 2
gene id LOC122351178
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 2559530 ~ 2560339 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAACTCAAGACCTTTAGCTGAGAAGCAAACAACTTTATTGCTGTTCTTTGTTTATTGTCGGTGTCTCAATCAGATCCGTCTCGTCATGTCCGGTCGCGGTAAGAAGCTGGTCGCTGCGCAGAAGACCAAGTCGTCGTCGGTGTCGCGCTCGACGCGCGCGGGGCTGCAGTTCCCGGTCGGTCGCGTCGCGCGGCTGCTGCGGAAGGGGAACTACGCGTCGCGCATCGGCTCCGGGGCGGCGGTGTACCTCACGGCGGTCATCGAGTATCTGTGCGCCGAGGTGCTGGAGCTGGCGGGCAACGCGAGCCGCGACAACAAGAAGCTGCGCATCGCGCCGCGTCACATCCAGCTCGCGGTGCGCAACGACGAGGAGCTGAACACGCTGCTGGGGGGCGTCACCATCTCCGAGGGGGGCGTGCTCCCCAACATCCAGGCGCAGCTCCTGCCGAAGAAGACCAAGGGCCCTCGGGACCCGGCCGACTCCAGCAAAGACATCCAGTCCCAGGACTTCTGACGGAGCTGCCTCCCTCTTCATCACTTTTAACTTAATAAACGTATTCatggtttttcttttaa

Function

GO:

id name namespace
GO:0006334 nucleosome assembly biological_process
GO:0000786 nucleosome cellular_component
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU971 lncRNA downstream 666 2556243 ~ 2558864 (-) True G638
XR_006251814.1 lncRNA downstream 7269 2548924 ~ 2552261 (-) True LOC122351916
TU1005 lncRNA downstream 7370 2548924 ~ 2552160 (-) False LOC122351916
TU988 lncRNA downstream 43355 2515654 ~ 2516175 (-) True G647
TU973 lncRNA downstream 48841 2474322 ~ 2510689 (-) True G640
TU997 lncRNA upstream 1016 2561355 ~ 2561966 (-) True G653
TU995 lncRNA upstream 1852 2562191 ~ 2564410 (-) True G652
TU1015 lncRNA upstream 92378 2652717 ~ 2654832 (-) True G666
TU1043 lncRNA upstream 179888 2740227 ~ 2742428 (-) True G681
XR_006251760.1 lncRNA upstream 260849 2821188 ~ 2833731 (-) True LOC122351434
XM_043246746.1 mRNA downstream 14544 2540488 ~ 2544986 (-) True f7l
XM_043246732.1 mRNA downstream 19115 2536351 ~ 2540415 (-) True f7
XM_043241463.1 mRNA downstream 24877 2530896 ~ 2534653 (-) True f7i
XM_043241449.1 mRNA downstream 30042 2524609 ~ 2529488 (-) True f10
XM_043246016.1 mRNA downstream 36212 2518723 ~ 2523318 (-) True prozb
XM_043249354.1 mRNA upstream 14403 2574742 ~ 2588258 (-) True pou2f1a
XM_043248783.1 mRNA upstream 29308 2589647 ~ 2597889 (-) True dusp27
XM_043248789.1 mRNA upstream 29308 2589647 ~ 2597850 (-) False dusp27
XM_043250896.1 mRNA upstream 44065 2604404 ~ 2628263 (-) True LOC122353060
XM_043240380.1 mRNA upstream 140151 2700490 ~ 2704267 (-) True LOC122345881
XR_006250784.1 other downstream 954546 1594758 ~ 1604984 (-) False LOC122343438
XR_006252053.1 other downstream 1429893 1129499 ~ 1129637 (-) True LOC122353706
XR_006252043.1 other downstream 1931712 627700 ~ 627818 (-) True LOC122353666
unassigned_transcript_1 other downstream 2120402 439054 ~ 439128 (-) True trnag-gcc
TU105 other downstream 2123405 435808 ~ 436125 (-) True G67
TU999 other upstream 128426 2688765 ~ 2689464 (-) True G654
TU1152 other upstream 1447501 4007840 ~ 4014287 (-) True G782
TU1193 other upstream 1737971 4298310 ~ 4299193 (-) True G820
XR_006252050.1 other upstream 3217232 5777571 ~ 5777657 (-) True LOC122353693
XR_006251180.1 other upstream 3285737 5846076 ~ 5853244 (-) False LOC122346875

Expression Profile