RNA id: XM_043248832.1


Basic Information

Item Value
RNA id XM_043248832.1
length 3959
RNA type mRNA
GC content 0.41
exon number 5
gene id si:ch211-132g1.1
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 1318790 ~ 1324793 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CACCTGTTCGACAGCGGCGCATGAGATGGCATCCTTCCACGCACCTGTGATGCACAGTGTGTCAGAATGCCTCCGTCTGCGCGACTGACATCTTCAGTTCATGGTTCTGTCTGCGTAACCGCCAGCTCTGATCGAGAACAGGAAATTCTTTCTGTCAGTTGATTGTGAAAAGGTTCTGGAACGTTTGCTGTTTTCAGAAGAGCAATGAGCTGCAAACGCACTCTCCTATTTCTGTTCCTCTGTGGCTTTGCTGCTCTCTCTGTTTCGGTGAAATGTACATCAGAGCTACTAGAGGGAACATCCTGCACCATCGATCTATCGTCAAAAAACATTGATAAATCTAAAGAGGTCAAATGGGTCCATCTCTCCAGTGAGTTAGTGATTCACAGAAGAAATGGGAAGATCAGGGCAGACTCTCTCAGTGGAACAAAAATAGAAGACAATGGGTCACTAACATTTCAGAGTGTTAGTCTGAAGAACACCggcaaatataaatacagtttttatgatACTAAAGGTACGGAGACAAGCGGAGAAGAGGAAATTAAAGTTTTtgCAAAGGCTCCTAAACCTACCGTGAGGATCGACTGCAAAGATGGTCTTAAACTCATCTGTGATGCTGGGAACCGTACAGATCTGTCTGTATCCTGGTATAAAGAAGCCAAAAGCATGAATATTGGAGAACTGAGCTTGAAATCTGATCAAGTAGAGGCGAATAAACCGTACTCATGCAGAGTAAGCAATACGGTCAGCAACGAGGAAAGTAACAGCGTTACACCATCAtGTAAAGATGCAGGTACAGGCGCTCCAGGTGAAGCCCTGTTTCCTTCTACACTCTTTGGCTTTGATTTCTGGATCATGGTGAGCATTTTAGCGGGCGGCGGAGcccttctgctgctgctgatatGCGTCCTCATCATCTGTGCATGTCGAAGCTGCAGAGAAAAGACGAAGCAGGAACAAGATGAAGATGAGCTGAGGCTGAGGGTTTTGCAAGATCAAAACGGCGCGGCCAGGTCCAAACACACTGCTAGGGGGCAACCGGCGCCCCCCATCCCGCTAGAAGACCCATGTTCACAGACCCCAGCCCAGTCCCAGGCTCAGCCCAAAGCCCAGACCCGCGGTCGACCTCCACCCCCGCCCGAGGACGACGAGGACAACCCTCCACCCTTACCTCGACCGAGGAATAAACAACACCGCAAGAGACACGAAGAGCCGTACCGACTGATGGAGTGAGACGCTCGTATGTTCACTGAAGGACCATTTCAATGAGCCATACACCTTATGAAGAATGTCAAGACGGTTCTCGCGTACATACAGCCAAAAGAAATGGTCGTTTATACTTAAAGCTCCTTAAACAAAAGTCCTTAAAACTTTTTCTGAGAATGATTTTTGTAAAGACTTACAATGCAATGTACAGTATtccagtgttggggaaagttacttttaaatgtagtgcgttaaaatattgcattactccataaaaaaagcaactaaTTATGCCACTTagtttatggaaagtaatgcatcGCTTTGCTTTtgcgttactttttaaatgcgaGCGAGGCTtggctgtgtgtttttaatatgagaAGCTCTATTCATAGCTAATGTAGACCAAAACGTGTAACAAAAAAACCTAGGCTGAAGGAAAAGTCTTTACAGTAGAATGCAGGAGAAGAAGGTTCAGCGCTcttcagcatttaaaaacaataaagccaAATTGAtagtttatttttgctaattagTATGGTTGCATTGGATCGTCGAAGatcagcagcaaagacatttatttaataaaatgggaTTCGATATTTGCCTAATATCTAATCCCGTTTTATTAGATAAACCTTTGATATGCTaccatatttgatttttttttttactattttttacagttttaatacattttttatataaagagaTTAGTCCTGTACAAACATCATGTCtacattatttgcattataatatatagaaCTGAAAACCCAGCTAAAACCACCCTAGGCTGGTTGGCTGGTCtcagctggttttagctggtctgACAAAAGCCAGGGTGGTTTTAGCTGGGTTTTTTCGGCAAGGTAGGCTAAATGAAGACAAAGAAGTAACTCTTGTAAATAGTATACTtcaataaaagtcaaaatatttattgcatttttctttttcgtgTCTTTCTATATGCAGTAAgaaataaactctttaaaaacatgctgTAAGGAATAAACTCTACTTTCAAGTAGGTCACTTAGATTTctgtatataacatttatagaCCGTAATATCGGTGCGATCTTGCGTTATTTCCTTGTGTTTGCTTGGCTGTTTGTCGTCGGCCAGTCTTTCTGTTGTGAAGCCATGCCGTGTTTAACCTCGTGCCACCGATCCACCATGCAGTGCATGCTCACCCACAGACGCGTGAAAACAGCTGTGACGCCACGACTATAATGCaattcaaatctgtgtaaagaaaagttgaaatgacaaaaaaaatgcctttttatataaattttgcatttgttaatgaTTCAGGGTTGCATTTAGAGCACATTTCCAACATaacagagcattaacttttagcagcagaccgtggatatttaacgtaataaaaaaatacgtgcatgtattaataaaattaaaacgtgccagggttcacatattgaacccgTGTTTTAGCTCCACTCAGTGGACGTTTGTCTTTGAAACTGTGGAGAAACGTGCAGAAAGGCATGTAAAAACGGTGACCAGGTTTTTATAAACAGATAAcgtcaaataaacacaaaaactcatAAATGGACATTGGCGCGTCTATGCAACGCGATTGGTTCGATTATTTAGGATACTatcaatatgcattttcatgagaccGGGCTCTTTAAATCACGGTCAGGGTCGGTTTCCAGGGAAATGTCTGATTAATGCATGTCATATACTCGGGAATAAAGAAAAGCAACCAGAAGTcagaatattactgtaatatcgTATATAATAAGTGGGTTTAGCTTGAAGAAAAGCAAAAAGTGAACgctaaactaaactgaaacacTTTTCATTAAATCACATTCAGTGTGCACTGGCTAGAATCACGAAACAATGTTTATGTTGGCAACGATGCAAAGCTCGAAAGCAGTTGCTGCTTTGATCTGTCTGTGATGGAAGCCGGTTCATGCCATTGAATAAAAAGGGAATTGTGAGGGTTTTCACGACACAATCTGCCCAAGCGCAACTCGAGTGATCAAAACAACGTTACGCCGCGAGTATCTGCTAGAGATGtctaacttttaaataatagaatacAGTGAATAGCAAAGTCTGTTTGTGAAGCGAACGTGAGTATATGACGGCTGGATTTAAATTTTCAGACTAATTATTTTACAGGCTCACTACCCTGCTGAAAACACCccccagctaaaaccagcctaggctGCTTGGCTGGTTTTAACTGGTCTCCCAGCCTGGTCTTAGCAGGTTTAAGCTGGTCGGCAGGCTGGTTTTAGAGTTTGTTCACATTTCCGGTCTGCCAGCCGGAAGACAACTAGCTAAAACCAGCTGCTTCCAGCTTAAACCACCTAAGACCAGCCAACAAGcccaggctggttttagctgttttttcagcagggtaaGCAGCCTGTTGTCTCTCAGGTCTTAAAACTTGTAAAATAAGATTATATTAaccattattatatttatttattaacccGACAGTTTGTAATTTTAACAGAAGCAGCTTTGAATGTAGCTTATGCTTAATGTCGCTTTTTATGGACGCAAAGTATCTCAAAGTTTTGTAGAAAACGAAAGCATGAGCCGAATGAGCCATTCTtccttttgtgtgtttattttctttcaccataaaagggaaaaaaaatataatcatttatatatttgaaagttTGAGCACCTATCGTCCGTTTTCAGTTCAAAGTTTTCGGTTCGTTCTTTTGCATTACTTCCCCATTAAG

Function

GO: NA

KEGG:

id description
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko04940 Type I diabetes mellitus

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU355 lncRNA downstream 33981 1282838 ~ 1284809 (-) True G244
XR_006251226.1 lncRNA downstream 55587 1256189 ~ 1263203 (-) True LOC122347488
TU339 lncRNA downstream 106647 1076188 ~ 1212143 (-) False mbnl2
TU331 lncRNA downstream 106647 1166508 ~ 1212143 (-) False mbnl2
TU328 lncRNA downstream 344821 973746 ~ 973969 (-) True G231
TU361 lncRNA upstream 19505 1344298 ~ 1346789 (-) True G247
TU386 lncRNA upstream 116295 1441088 ~ 1441512 (-) True G260
TU436 lncRNA upstream 242245 1567038 ~ 1567532 (-) True G297
TU451 lncRNA upstream 255950 1580743 ~ 1582087 (-) True G303
TU454 lncRNA upstream 259098 1583891 ~ 1584684 (-) True G304
XM_043246720.1 mRNA downstream 3252 1277500 ~ 1315538 (-) True ptgfrnb
XM_043242641.1 mRNA downstream 48865 1264771 ~ 1269925 (-) True slc5a3a
XM_043242661.1 mRNA downstream 92077 1166687 ~ 1226713 (-) False mbnl2
XM_043248853.1 mRNA upstream 6890 1331683 ~ 1333824 (-) False si:ch211-132g1.6
XM_043248843.1 mRNA upstream 6890 1331683 ~ 1333823 (-) True si:ch211-132g1.6
XM_043247012.1 mRNA upstream 22701 1347494 ~ 1353796 (-) True LOC122350472
XM_043247143.1 mRNA upstream 39749 1364542 ~ 1370987 (-) True LOC122350536
XM_043247230.1 mRNA upstream 39749 1364542 ~ 1370825 (-) False LOC122350536
XR_006252053.1 other downstream 189153 1129499 ~ 1129637 (-) True LOC122353706
XR_006252043.1 other downstream 690972 627700 ~ 627818 (-) True LOC122353666
unassigned_transcript_1 other downstream 879662 439054 ~ 439128 (-) True trnag-gcc
TU105 other downstream 882665 435808 ~ 436125 (-) True G67
TU47 other downstream 1131705 186420 ~ 187085 (-) True G20
XR_006250784.1 other upstream 269965 1594758 ~ 1604984 (-) False LOC122343438
TU999 other upstream 1363972 2688765 ~ 2689464 (-) True G654
TU1152 other upstream 2683047 4007840 ~ 4014287 (-) True G782
TU1193 other upstream 2973517 4298310 ~ 4299193 (-) True G820
XR_006252050.1 other upstream 4452778 5777571 ~ 5777657 (-) True LOC122353693

Expression Profile