RNA id: XM_043249769.1


Basic Information

Item Value
RNA id XM_043249769.1
length 3222
RNA type mRNA
GC content 0.35
exon number 11
gene id lztfl1
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 422900 ~ 433678 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gaaggatAAGGGGAAGgggaaagagagatagagatagagacaCATATGGCGTTACTGGGCACATCAATACAGCGTAATTTTTGTCACTGTGCACAACagtaattactatttttaaattattggaAGGGGTGGGTGTAGAcgctaataaaacaaaatctaaaaggTAAATTGTTTGTTTCCGGTCGGAGCTGTATCCCTTTTAGccacaaaagaagaagaattaacACGTCCCCTGTAGTCACATGGCGAATCTGTCTCTAGTGTCTTTAGTAACGGAGTGACGCCGTTCTGTTTCTAAGCGCAACCCAGAAGCAAAATAAGGCTCTTCTCGCTAACTTTCATTGTAAATTCTGCAGTCCTTCACACCATTCCCAGTCTATTTTCATGAAAGTGCCTTTTGCTTTTCGGACCTTTTGTTAAGGCTCTATATTTAATATTGGATacgtttatttttcttcttgccACGTTAAAACTCTTCTGCATCACCCTGCCGTAATGGCTGATTTTGAGTTTAATGAGCATCATCAAAATGAGGTGATAAACTACATGCGTTTTGCCCGCTCTAAACGGGCACTGAGACTGAAGACAATTGACTCCTGCTTCCAAGATCTAAAAGATAGTAGGCTTATGGAAGAGACATATACAGTAGATGAGGTATCTGACATGCTGGACGGTCTGCAGGTGCTGGCAGAGAAATTCTACCTAAGGTTGCAAACGGACATTTCTGAGCTGGAAAACAGAGAACTACTAGAGCAAGTAGCTGAGTTTGAGAAGACTGATTTCAAAGCCAACAGCAAGgtAAATCAGGAGTCTAGTAAGCCAAAATTGGCACCACTGAATGAAGGAGGTGTGTCTGAACTACTCCAGaaggAGATTTCCAGACTACAAGAGGACAATGACAAACTAAAAGCTAGACTTAGGACTTTGGAATCTCAGGCCATGAGTGCTCTGGATGACAAGTCTAAAGCAGAGAGAGCCTTGAAAGACCTTCAGAAGAGCCAAGGAGATCAACAGTTTGCAACACATACTCAGGAGATCTCAAATTTGGAAGGCACAGTTGCAGCTATGCAGGCTGACTTTGAAAAGACCCTGAATGCTAACGTTGCATCTCAGAAAGACTTGCAGGACTGCCTGGTATCTGCCAAACATGACCTGCTCCGTGTCCAGGAACAACTTTCTCTTGCTGAAAAGGAACTGGAGAAGAAATTTCAGCAGACGGCTGCTTATCGCAACATGAAGGAGATTCTCACTAAAAAGAATGAACAGATTAAAGATCTGAGAAAGAGATTACAAAGGTATGAATCAGATGAGTGAATTTTAACCCACAGGAACACACATGAGGTCAACAGATTATCATTGGACCTGATGTATCAGCTACACCTTGTATGCTTACTTTGGATTAGAAATATTATTGGGCCATTCACACTACAATTACCTAGTTATTCATCAcctctctgtatttttttttttaagtgtttacaACTGGTTACCTGAGAGGAAGCTTTATAAGTACCCTCATATACTTTGTGGGTTCACTTTGCTTAAGAGGAAGTGTATTGCTCATAGATTTGCTCCCTCTTTACTGGAAGAATACAACTCAACACTTTTGtcaaacattgtttaaaaaaaactacacatttatgcgttataataataataataataataataatgatgaattCTTCCagttgtatgtttttatgtatacagTAATCTCTTTAATCTACTAGGAGCTTGAGCTATAGCAACAAGCATATAACCtataaaaaagtgtatatataatataataattaagcaTAATCCTGTGTGATCCATGTGTACGatgtataatgttttattgccaccttaaaaaaaatgtaatctaaaattACGAGATTAAAGTCATTTcatgaataatgtaaaaattccgagaataaagtagaaatattaCGAGAACAAAGTCAAACTATGAGAATAAGGTTGAAATATTTCAACAATAACCCTCAATAACCCTTATGTTATGTTCGGGCTGTTTTTGTCCcaaaaagattttctttttcccaAATAGTAATGTTTACTAATACTTAATACTAATAATGTTTTCGAATTGGACTTAAATTTAGTTAATATGTACtactacttaaatattttttttttatttagcttgttttctttcatttaggaATGGTTTTGTATTTCTATGTGCATGATTAATCTGTTTATCTGAGAGTAAATACCTAATTTTTAAGgtgaacattttgttttatcttaattttcacaatattaaagaattataaaaaaatttgcaCTGTTCATCACACTAGTGTGCTTTAATGTTTAATCTGGAagtttgcttttaaatgcttttattttgtacaaaattgCAAGAAAGTCACAATTTATTTCTATGTGCATTTGATTAATCGTAAGCCTCATTTATACAAAAGTGGGTCCCACATTTTTGGAGTgaaaatttatttcataaatacttTCCTCAATATgagctaaaaaaaatgatgaaaaatgtgttttttgttaaatcAATAGGTTTGTGTaggtaaatgcttttattttgttcaaaatttaACAAAGTCTCACTTGTCAAAAATGGGCAGCCATTGAAAATGAATGGGGAAGAATGACAGTAAAAGAAACAACTAGTGTTCAGAAACATGTGTTTGTAAACATAAGGGCTTTAGACCTTTGCGTGTGTGGATGCATGTATACTCAAGCtacctcacacactcacacagacactgcTTTGTCTTTAGTCTGTATTGaactcaaaataatattttctttcaccACATATTCAAGACAAAACATGATAAGTTTTAAGGAGTTCATGTTCTCAGAGTAGACAAAAGCACAGAGAGAAAGCATACAAATGCCTCACAGTTCCTTGCTTGTCATTCAGTCTGTTTTAGTGCAAAGGTGAAGAAGCTGAAAATCTTGCAACAGCTGAAGTGGAGAAATATTTGGATTTTGAAGAAATTCAGCCCAGCTGAAGTTGATGTAACATTCTGGTCGAAgggtgggaaaaaaagaaaaagaaaaaaaaaaaagattatattgaAGACAATGCAGGCTAAAGACAAGGCAGTTTGAATTTGTGTGTAATAGAGAAATAGAGAGTTataacatctgtgtgtgtgtgtggatagaGAGTATACATGCATCCATACACACAAGGAATAAAGTTGAAACATtgtgagaataaaataaaaatgtatcaagaATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104 lncRNA downstream 491 422132 ~ 422409 (-) True G66
TU86 lncRNA downstream 29048 393299 ~ 393852 (-) True G56
TU81 lncRNA downstream 201572 218929 ~ 221328 (-) True G51
TU80 lncRNA downstream 201826 218579 ~ 221074 (-) True G50
TU46 lncRNA downstream 244699 177676 ~ 178201 (-) True G19
TU108 lncRNA upstream 8201 441879 ~ 442209 (-) True G70
TU110 lncRNA upstream 13830 447508 ~ 447882 (-) True G72
TU111 lncRNA upstream 14650 448328 ~ 448640 (-) True G73
TU141 lncRNA upstream 290067 723745 ~ 724036 (-) True G99
TU158 lncRNA upstream 307392 741070 ~ 748364 (-) False LOC122342053
XM_043241388.1 mRNA downstream 14814 404682 ~ 408086 (-) True ccr9b
XM_043247627.1 mRNA downstream 61297 210723 ~ 361603 (-) True gli3
XM_043238439.1 mRNA downstream 217341 193211 ~ 205559 (-) True prpf4bb
XM_043235838.1 mRNA upstream 304459 738137 ~ 745984 (-) True LOC122342053
XM_043235840.1 mRNA upstream 332548 766226 ~ 826226 (-) True LOC122342059
XM_043235714.1 mRNA upstream 617068 1050746 ~ 1116435 (-) True farp1
XM_043235704.1 mRNA upstream 617068 1050746 ~ 1116426 (-) False farp1
XM_043239696.1 mRNA upstream 684163 1117841 ~ 1137065 (-) True kpnb3
TU47 other downstream 235815 186420 ~ 187085 (-) True G20
TU105 other upstream 2130 435808 ~ 436125 (-) True G67
unassigned_transcript_1 other upstream 5376 439054 ~ 439128 (-) True trnag-gcc
XR_006252043.1 other upstream 194022 627700 ~ 627818 (-) True LOC122353666
XR_006252053.1 other upstream 695821 1129499 ~ 1129637 (-) True LOC122353706
XR_006250784.1 other upstream 1161080 1594758 ~ 1604984 (-) False LOC122343438

Expression Profile