RNA id: XM_043250896.1


Basic Information

Item Value
RNA id XM_043250896.1
length 2741
RNA type mRNA
GC content 0.51
exon number 9
gene id LOC122353060
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 2604404 ~ 2628263 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAAACATCGGCGCGGTGTGGAAACGCGGCGTGACGCGCGATCAGGCGGAGCGACGCAGACCAGACGCGGGCGAGCGCAGCTCCTCAACGCGAACACCGCGCGTCCGCCGCCGTCTGCGGTTCGTTCGAGGATCGCGGAGCTTTAATGGTTTCTAGGCAAATCAAGAACGATTTCCAGGATTCGTGAGAAGacGCGTCATGCTGTGCTTCCTGCTCCTGACGCTCCTCTGGACGCTGGTCACTGCGGCTCTGCAGCTGTCCACACACACCCTCGCCAGCCCTCAGGACGATAGAACAAGGCCGTATATTTACCGCTGCCGCTCACCCAACATGGAGATCTTCACCTGCTGGTGGCGTCCGATTGCTGATCAGGACAACGTCAGCTATACACTCCACTACAGCAGGGGTGAGCGCGCTCTTCAGGAGTGTCCCGATTACGTGAGCGGTGGCGTCAACAGCTGCTTCTTTGATGCCAAACACACTCAGATCTGGGAGATTTACTGCATGAATGTGACGGCTCACACACGCACCGGACCCATCTCCTCCTACAAACACTGCGTGGACGTGGCCGATATAGTGGAGATCGACCCGCCCTTTAACCTGACGTACATCATGCTGAACGAGAGCGTGGGTGAATTGAGCCGCAGTATTCTGCTGTCCTGGCTGTATCCCGTCGAGCCTCAGGTGCGCGAGGGATGGATCACTCTCATCTACGAGCTGCGCTACAGACCTCTCTCTCAGCCGGACAGCTGGAGGCTGAGGGAGCGTTTGCGTGAGCCTCACGTGGAGCTGGATCTGCCGGTGGGGAAGTACGAGTTCATGGTGCGCTGCCGCTCCGCCAACAGCAAACACTGGAGCGCATGGAGCGAGTCCATCACCGTCAACATCGCTGGCAGACCTCTGtccgATCGGATGTTGGCCTTGATCCTCGTGACCAGCATCACCATCATGGTCTTCCTCATCGTGGGTTTGGGGATCGCCCCGCGAGGCAAGAGAATTAAATCCTTCCTCCTGCCACCGATTCCCAAGCCGCGTATCCGAGGGATTGAACCGGTTCTGCTGAAGAAGGGGAAGATTGACGAGATCAATCGCCATTTCTCCAGCTTTCACGGTTATAAGTCGCCGCAGTACAGCATGGAGACGTGGTACCATTTGAGCGTGGACCCGTGTCCGGCTGCGACTCCGTATAAACGTGAGGATGCACTGATCGCAGACAGACAACCGCCTGCGCCTCAGAGCTGCAGTCCTGCGCCATACTGCCATGGCCCCACCCCCTACTGCGAGGCACCCATGCCTCTTTCCAATTCTGACCCCACCCACTATTGTGAGGGAGCCCTGCCTCCTCCAAACCACGGCCCCACCCCTTGTTGTGAGGGAGCCCCACCCAGTTTGAACCCTGGCCCCGCCCATTCTGAGCTCATGTGCGTCCCAGGCACAGACTACAGCATGATAATAAGCCCCGCCCTGGTGCCGCCGCAGGACTTCTACACCTGCGTGAAGGGCGTGACGCCCGGCGGAGCGCTGCACCTGGTGCCCTGTCTGCCCGACGCTCTGAAGAACACACCCTACCTCCAGTTCACTGACGACTGCGCAGACAAGAGCAGCCAGCTGGTGGCGCTGCTGGAGAAACAGATGGAGGCGCTGCTGAGCTCCGGCGACTCGGACCCCAGCGAAGCTGCCCTGCCGCTGCTACCTCACTCAGACACGAACTGAGCGCAAACTTGGAGCTAACGCACAAGCGACGtacaatctcacacacacacacacacacacacacacacacacacacacacacacacgcagtctGTGCTGGATTCTTTTGCCTGGTGTTTTGGTTCAAAAAGAGTGCATTCACTGCCTAAAATGCCAGatgatatttttttgtggtATCTTGCTGTGATTGAAACACTGACTGAGTGATTGCATGAGGCATGAGaagttcattcatgtttattacaTGTTAAAAACTAGCAGGGAAAGGGAAAGGGCATACAACTGGAagttttttaatgaagttcAGAAACTTGTGCAGTGCTTAAAATGGCGCTGTTTCTGTTCAGTGTGCATGCATACTAAACCAAGACACCCATAACAACATCTTTTACTGTTACACACTTCTTACTGTTACACTCTTAGTAGTTACCCAGAAATCTACATACAGAGTGCAGATGATGTCAGAACGGTCAtgcttttaatgaatgaaagtgtgtatatatatatacatatatatataggtcaGTTATGAAGCCGGTTCACTGATGAGCTACACATTATCACGTTCAGTTTTGTGGATGAATATATCGTGATATATTGCTCAGTCCTATATGGCTACacatttaatgcttttgttCTAATTTTAACTTGAATACTGCATTAACTGAAACTAattatcatttagtttttttatatacagaaaataGTCCATAATTACGatactaatattaaataacatgaaataCAGTTGAATgagatatttttgtgaaattaaatatagtatatttatttcacgaaatttaaattattacatgatTATGGCCTCCGGTCAGTTTTGATCTCAAACAAAGCAAGTGTAAGACCTACATGAACACATGACCTGAGTCCCATCAGATAACACACAGGAATACAGAAAACAGCTTCGTCAATACTTCAGATGAAACCACACAGACTgcactgtaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU995 lncRNA downstream 39994 2562191 ~ 2564410 (-) True G652
TU997 lncRNA downstream 42438 2561355 ~ 2561966 (-) True G653
TU971 lncRNA downstream 45540 2556243 ~ 2558864 (-) True G638
XR_006251814.1 lncRNA downstream 52143 2548924 ~ 2552261 (-) True LOC122351916
TU1015 lncRNA upstream 24454 2652717 ~ 2654832 (-) True G666
TU1043 lncRNA upstream 111964 2740227 ~ 2742428 (-) True G681
XR_006251760.1 lncRNA upstream 192925 2821188 ~ 2833731 (-) True LOC122351434
TU1059 lncRNA upstream 438548 3066811 ~ 3070069 (-) True G692
TU1063 lncRNA upstream 484007 3112270 ~ 3120797 (-) False G695
XM_043248783.1 mRNA downstream 6515 2589647 ~ 2597889 (-) True dusp27
XM_043248789.1 mRNA downstream 6554 2589647 ~ 2597850 (-) False dusp27
XM_043249354.1 mRNA downstream 16146 2574742 ~ 2588258 (-) True pou2f1a
XM_043248069.1 mRNA downstream 44065 2559530 ~ 2560339 (-) True LOC122351178
XM_043246746.1 mRNA downstream 59418 2540488 ~ 2544986 (-) True f7l
XM_043240380.1 mRNA upstream 72227 2700490 ~ 2704267 (-) True LOC122345881
XM_043236073.1 mRNA upstream 82454 2710717 ~ 2717844 (-) True LOC122342272
XM_043249739.1 mRNA upstream 89724 2717987 ~ 2720143 (-) False hikeshi
XM_043249749.1 mRNA upstream 89724 2717987 ~ 2720143 (-) True hikeshi
XM_043243767.1 mRNA upstream 92392 2720655 ~ 2723920 (-) True eed
XR_006250784.1 other downstream 999420 1594758 ~ 1604984 (-) False LOC122343438
XR_006252053.1 other downstream 1474767 1129499 ~ 1129637 (-) True LOC122353706
XR_006252043.1 other downstream 1976586 627700 ~ 627818 (-) True LOC122353666
unassigned_transcript_1 other downstream 2165276 439054 ~ 439128 (-) True trnag-gcc
TU105 other downstream 2168279 435808 ~ 436125 (-) True G67
TU999 other upstream 60502 2688765 ~ 2689464 (-) True G654
TU1152 other upstream 1379577 4007840 ~ 4014287 (-) True G782
TU1193 other upstream 1670047 4298310 ~ 4299193 (-) True G820
XR_006252050.1 other upstream 3149308 5777571 ~ 5777657 (-) True LOC122353693
XR_006251180.1 other upstream 3217813 5846076 ~ 5853244 (-) False LOC122346875

Expression Profile