RNA id: XM_043251470.1


Basic Information

Item Value
RNA id XM_043251470.1
length 4658
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC122353624
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 3695165 ~ 3701245 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttctctctccgaTTGTCTTACCATCGCCATCACCCTTCAATTATGCTGTTGCGTAAAATAAGATAGAGAGAGGGCAGTGTGCGAGCAACATTGTGCACGAAGCTCTTATTTTAAGTCCTCTCATAAATATTCCACCCTGCCCCAAATTTACAATTGATCTGACGACAGTACAGCAACAGTGAGCCAATGGAAATCCAAGTTCCACTAGTTGAAACACTAGTTAAGATGGCAACACATCTCCAAAGACGGATTTATGGGAACCTCTTGccaaaacaagaataaaaaaaatacagaaatatgaaAACAGACAACACGGCATTGGAGGAACCAGAGATCAGCGAAGAAATCACATGTACATCCGGCAATATACAACGCGATACCAGCCGTACCACTCACAAGCGTCTCGGGGATGCGTACTTTGCGCGTCCGTTCCTGAGAAAAAGGGATAGACTGCCTTGCTCGTGGATACATTTCGTTTAAAATGGACATTGCACTGGTTGGATTTTGCCAAGGAAGGGCAACGCACATCAAGCGAAATTCCTAAACTTGCGTTTTTCCTATTTTCAGCCAGCTGACCGTCACGTTTCCAGGGAGAGTTTGCGATACCCAGGCTGATCACGAACCGCTTCACGGATTATTATACAGTCGGGCTAAAGAGGCACCGGCGTCTTCAAGGTTATGGATTGGCCGTGCTCATGATGTTTTCGAATTTACCACGTTTAAGCGGATGGAATCGGGCTATAATCGATGACGTCGCTTCTGCTTTTAATCAACTCGCGTCTTTGTCGCCCGAGGGATGAGCTATGACTGTCACATATAGCATCAAAGGGAGAAATTCAACATAGGCACCTTTGTGAAACGTAGATGTGTCGTGCACTCCGAGGTTTAACTTCGATACTGGTTGAGAGTTGATAAAAAAACTGAAGTCGTCGGATATGTGGGATGACACCTCAAACTGCAACTGCACTACCGTGAGCTGGGCCATTCCTGCACAAGAAAATGCATATCTGGATACTGAAAATAATATTGCTGGTTGCCACATCTCTGAGTCTGGTTGAGATGTATGACAATTATGGGGAGATCTGTAGGAATCTGTGCACTTGCGAGGAGAAGGAAGGCATTCTGACGGTCAGTTGTGAGAACAGGGGCATTGTGCGGCTGTCGGAAATAAGCCCAGTTCAGTTTTCTATGTACCATCTTTTGCTGACAGGTAATTTGCTGAAAAGACTATCTGTCAATGACTTCATCAACTATACTGGAGTTACTATTTTGCATTTAGGTAATAATGACATATCTGAGGTGGAGACCGGGGCTTTCAACGGGCTCCAAGGATTAAAGAGATTACATTTGAACAATAACAAAATAGACATGCTAAGGGATGACACTTTCGTCGGACTCGAGAGCCTAGAATACCTTCAGATAGACTATAATTTCATTAGCACTATTGAACCTAATGCTCTGAGCAGGCTTCAGCAACTGACTGTGCTTATTCTCAATGACAACTTGTTGTCCTCTTTGCCCACAAACATTTTCCGGAATGTGCCCTTGACGCACCTGGATCTTAGGGGCAACCGCTTAAAAATGTTCCCTTACATCGGCCTTTTGGAGCATATGGACAAAGTAGTGGAATTACAGCTTGAGGAGAATCCGTGGAATTGTTCCTGCGAGCTCATTGCGCTTAAGGCTTGGCTGGAAAGCATCGCCTACACAGCTCTGGTGGGGGAGGTGGTATGTGAGACTCCTTTCAGGCTCCATGGCAGGGATCTGGACGAGGTCTCAAAGCAGGAACTGTGTCCCAGAAGGGCCATATCAGAGTACGAGATGCGGCCTCCACCCCCACTCAGCACCAGCGGCTATTTCCAGACCACACCGGCGGCCGTGACGGCATCAGCCACATCTTCGGCCGTCCTGCGATCCTCGTCCAGGCCGACCAAGGGCACACGGCAACCCGGCAAAACCAAGTCCAAGCCTACTTCTCGAATCCCAGCCAACCCCTACAACTATGGGCCCATCATTGCTTTTCAGACCAAATCTCCCGTGCCTTTGGACTGCCCCACCACATGTACATGCAATCTACAGATCTCCGACCTGGGGCTAAATGTCAACTGCCAGGAGAGGAAGATTGAAAACATATCAGATCTGAAGCCCAAGCCATACAATCCTAAAAAGATGTATCTCACAGGGAACTACATCCCTGTCGTTCGTAGATCTGACTTTGTGGAGGCTGAGGGACTGGATTTATTGCACCTGGGAAACAATCGGATAGCACTCATACACGACAGAGCCTTTGGGGATTTAATTAACCTACGTAGGCTGTACTTGAATGGCAATTTGATTGACAGACTCACAGCAGATATGTTCTTTGGGTTAAAAAGTCTGCAGTACTTgtatttagaatataataagATTCGAGAGATTGTAGGTGGCACCTTCCGCTTTGTGCCCAACCTTCAGTTACTTTTCCTCAATaacaatcttttaaaaacattgccAGGAGGCATCTTCTCTAGTCTGTCTCTCTCCCGACTCAACCTTCGCAGCAACCACTTTCAAAACCTGCCTGTCAGCGGAGTTCTGGACCAGCTGAAAGCACTGGTCCAGATTGACCTATTTGAGAACCCTTGGGACTGCTCCTGCGATGTGGTCGGCATGAAGATCTGGCTGGAGCAGCTAAACACAGGAACAGTGGTCAATGATGTCAAATGCGTGACTCCCAAGCGGCTCGCGGGCCAGGATATGCGGGTTGTCCCCTCTGAGCAATTATGTCCAGATTACTCCGATGTCATCGTCTCCACCGTGGTTCCTTCTGAGGAGCCTTCTGCAGACAGGATCACCACCACGGAGACACCCCAGAGGTTTAACACCCATTCCAGTAACGTTCCTTTGTCTGTCCTCATTCTCAGCCTCCTCCTTGTTTTCATTATGTCGGTGTTTGTGGCAGCCGGCCTGTTTGTGGTGGTGATGAAGAGGCGTAAAAAGTCTCAGAGCGACCGTACCAGCACAAACAACTCTGATGTGAGCTCCTTCAACCTGCAGTACAATCTCTATAGCAATCGCTCCGTTCCCAAGGTCAAGGCCCCAGCGGGTCATGTCTATGAGTACATTCCCCATCCGTTAGGTCACATGTGCAAAAACCCAATCTACAGGTCCCGGGAAGGGAATGCTGTGGAGGATTACCCTGATCTACACGAACTCAAGGTCACCTACAGGAGTAATGCTGACGAGGACCAGGAGGTCACCTTGAGGAGCCCGAATTACACAGTGAGCACCATCGAGCCTCGTGAGCAGCCGTCCCCTGTCCAGGATGCAGAACACTTTTTCCGAGGAATCCTGGAGCCGGATAAATCCCCATCGACTGCTGGCAGCAGGTTTGAATATAAGTACACTGGCCCCGTCCCGTACACATACCAACCAAACTTCGACGTCAGGCGCCAGTTCTTACATCCAGAAGGAATACGAGAGACTATGCTATATGGCACAGCGCCAAGTACTGTCTTTGTGGAGCCCAATAGAAACGACTATTTGGAACTAAAGGCAAAACTTCAAATAGAGCCGGACTACCTCGAAGTTCTTGAGAAACAGACAACACAGAGCCAGTTTTAAATGTTGGGCTATCTATAAATGCAGTAGATGCATTTTTCCCCTTGTACTGACTCAAACTGGAGGGTGCCTTGGCACAACATACATCAAcgtaaagagaaaaaaaaaagtccaaatccTTAAGTGGGGTGTGCCGAACTATGTTACTTTAATTTCAGAACCACATGGCATTACAGAAATATCtaagaatgaaaacaaataaatagagcTCGCGGAACTTGGATGAAAGCACGAGTTGTGATATAAAACTGGCGAtgcaaaaatctatttttttaagtggaTGATTGAATACTCATAAATCTAAGTGTACAGGTTAATCTCACCCAAATACATTTTCAGGAATATAATCATACAAATATTGTGAATTTAAAGAGGTCGGGGAGGGGTTTCGCaaacaagaacaaaagaaaaaaaacaaaaaacaaaaaaaaaacacaactttctGACAGAAACACTATACAGCAGCGCATCCAATCGAGCAGGACAATTTCTCTGCTTTAGTCTGTAAGTAAGTACTGTATTTATTGGTATACTCTTTGCCatgtattttcaacattttttcaatGCTCATCAATATTATGTGTGTCATGTCCCATTCTCTGTACGAACATTTTGTTTGTAGTTTCCGATCACTTACTGTAGCTTGCATTGTACAAGTGGCTTTTTTTCAGCAGTGGCACACCCCAATGTCGAAGAGAGACTTTGCATCATTTAACAATTTCAAAGGAAAAGTGTCTTTGTATGCTGTCTGCACTTTTTTGGAAGATGGAAGGCCACAGGGCCTTCCCAGCTAACGTTagaagaaatattatatattaaaaatgaatatgtgtATTCATtcttaatatgtatttttaatatgttatatcaaaattcataaataataattgaagtAATAATTATGTTGTGTAATACtgatattttaatgtaacacCTATTTTTATACAAGCATTCGCAATTCTCTTTCCCTTATCGTTTCCATTGTTTTGATTGCTTTGCACTTATTGCACTATATTGaccaaaatatgtttatgtcaTCAATAAATATGATGTCGGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1100 lncRNA downstream 351672 3343091 ~ 3343493 (-) True G732
TU1098 lncRNA downstream 353212 3341562 ~ 3341953 (-) True G730
TU1088 lncRNA downstream 408956 3285956 ~ 3286209 (-) True G720
TU1085 lncRNA downstream 558211 3136510 ~ 3136954 (-) False gpc5a
TU1062 lncRNA downstream 574368 3116330 ~ 3120797 (-) True G695
TU1162 lncRNA upstream 321122 4022367 ~ 4024242 (-) True G792
TU1164 lncRNA upstream 323461 4024706 ~ 4026047 (-) True G794
TU1167 lncRNA upstream 324860 4026105 ~ 4028108 (-) True G797
TU1173 lncRNA upstream 336493 4037738 ~ 4037970 (-) True G803
XR_006251102.1 lncRNA upstream 744814 4446059 ~ 4454180 (-) True LOC122346152
XM_043251495.1 mRNA downstream 410379 3202552 ~ 3284786 (-) False gpc5a
XM_043251484.1 mRNA downstream 410385 3136508 ~ 3284780 (-) True gpc5a
XM_043235137.1 mRNA downstream 955576 2732846 ~ 2739589 (-) True cep97
XM_043235150.1 mRNA downstream 962807 2726297 ~ 2732358 (-) True nfkbiz
XM_043243767.1 mRNA downstream 971245 2720655 ~ 2723920 (-) True eed
XM_043240772.1 mRNA upstream 830544 4531789 ~ 4546466 (-) True ndfip2
XM_043240711.1 mRNA upstream 868589 4569834 ~ 4574420 (-) False mnx2b
XM_043240702.1 mRNA upstream 868589 4569834 ~ 4574420 (-) True mnx2b
XM_043240393.1 mRNA upstream 895835 4597080 ~ 4618627 (-) True fn1b
XM_043240404.1 mRNA upstream 895835 4597080 ~ 4618626 (-) False fn1b
TU999 other downstream 1005701 2688765 ~ 2689464 (-) True G654
XR_006250784.1 other downstream 2090181 1594758 ~ 1604984 (-) False LOC122343438
XR_006252053.1 other downstream 2565528 1129499 ~ 1129637 (-) True LOC122353706
XR_006252043.1 other downstream 3067347 627700 ~ 627818 (-) True LOC122353666
unassigned_transcript_1 other downstream 3256037 439054 ~ 439128 (-) True trnag-gcc
TU1152 other upstream 306595 4007840 ~ 4014287 (-) True G782
TU1193 other upstream 597065 4298310 ~ 4299193 (-) True G820
XR_006252050.1 other upstream 2076326 5777571 ~ 5777657 (-) True LOC122353693
XR_006251180.1 other upstream 2144831 5846076 ~ 5853244 (-) False LOC122346875
TU1845 other upstream 2410218 6111463 ~ 6113523 (-) True G1270

Expression Profile