RNA id: XM_043263564.1


Basic Information

Item Value
RNA id XM_043263564.1
length 1966
RNA type mRNA
GC content 0.50
exon number 13
gene id wu:fa56d06
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 1605876 ~ 1612082 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTGCACGCCAACCTCTGAACCAGGTTATTATCTGAGTCTCCGGGTTATTAAAGGCGACTCCAGAGTGCATGAGATCCTTGTTGTGTGAGGGTCATATCAGGATGCTCAGGGTCTTGCTGCTCCTGCTGGCTGCGTCTGGTCTCCACGCAAGACCACTGCACCGATTCCCAAATGGTAGATTAAAACAAATAGGGCCACAAATGGTCCAAGATGAACACAGGGATAACTCAGTTCTGAAGCTCACGAACACTGATGTGAAACCCATGAAGCAATTACCAGTTCCCGCTGAGTTCTGCAGGCAGGGAACAGAACCTTCCAGACGCTTCCTGATGGATCTGAACACTGGGATGATCAAGCATGGAGTTGGTGAAATGAACAGAAGAGTTTCGGGATTGGATGAGTTCAGGCAAGGCACTGAGAAGCAGATGCACACCCTGCAGGAGCTCAGGATGCGTCCCGTGATGAGATCGCAGTACAGCGCTCAGAGCGAAAAACACGAGCAGAGAGCGATCCCTGACGAGGTCTACAGAAAAGGCACTGACGCATCCCAGAATATCCTGATGGACCTGAACACCGGTCTGCTCAAAGAACACAGGGACGAGACGGACAGGAGATCAGCCGGCTCAGCTAAATGGGAAGTGGTTTCTGAGCATGAGGACATAAGAAGCCAAGACTCTTCTCAACCTAAGGAGAACCACAAAGCAGTTCCTGTTGAGATCCGCAGACAGGGCACAGAACCTTCCAGACGGATCCTGATCGACACAAACACTGGGATGCCCAAGGAGCAACTCGGCGAAATGAACAGAAGAGTTTCCGgctTCTACAATCCAGGCCCTATTGAGAAGAGACAGGGAACAGAACCTTCCAGACGATTCCTGATGGACATGGACACTGGGATGCTCAAGCACGAAGTTAGCGAAATGAACAGAAGAGTTTCTGGCTTCTACAATCCAGGCCCTATTGAGAAGAGACAGGGAACCGAACCTTCCAGACGATTCCTGATGGACATGGACACTGGGATGCTCAAGCACGAAGTTGGCGAAATGAACAGAAGGGTTTCTGGCTTCTACAATCCTCCAGCTTACGAGATGAAGAAGGGAACCCAGAATTCTCACGCCACTCTCGTGGATCCCAGAACAGGACAAATAAAGCCATCTCTAACAGAGCTGCAGAGGAGCGCTGCACCATTGGATGAGTTCAGACAAGGCACTGAGTACCAGCCGTACATCCTACAGGAGCTCAGATCGAGTGCGCTGCACAAACAAGGCTCTGAACCTTCCAGAAACCTCCTGATGAATACGAACGCCAGTCTACTTAAagaacaccaaaataaaaaggACTCTTCTAGACATAAGGAGAACCACAAAGCAGTTCCTGTTGAGATCCGCAGACAGGGCACAGAACCTTCCAGACGGATCCTGATCGACACAAACACTGGGATGCCCAAGGAGCAACTCGGCGAAATGAACAGAAGAGTTTCTGGCTTCTATAATCCAGGCCCTATTGAGAAGAGACAGGGAACAGAACCTTCCAGGCGATTCCTGATGGACATGGACACCGGGATGCTCAAGCACGAAGTTGGCGAAATGAACAGAAGGGTTTCTGGCTtCTACAATCCTCCATCTTACGAGATGAAGAAGGGAACCCAGAATTCTCACGCCACTCTCGTGGATCCCAGAACTGGACAAATAATGCCATCTCTAACAGAGCTGCAGAGGAGCGCTGCACCATTGGATGAGTTCAGACAAGGCACCGAATACCAGCCGCACACCCTGCAGGAGCTCAGGATGCACGACATTatgaCAGCTGGCGGACGACGTTTGGCTGCGTTCATACAGACTGCATGACAACCATCTAGTTGACTTAATTGTTGGATTCAAACGTTTCATGAAATGAAAGTGTCATGCAATCTTTGTAATGACCTCACACGtcatttctgcaaaataaatgcattaacaaaatcata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU454 lncRNA downstream 21192 1583891 ~ 1584684 (-) True G304
TU451 lncRNA downstream 23789 1580743 ~ 1582087 (-) True G303
TU436 lncRNA downstream 38344 1567038 ~ 1567532 (-) True G297
TU386 lncRNA downstream 164364 1441088 ~ 1441512 (-) True G260
TU361 lncRNA downstream 259087 1344298 ~ 1346789 (-) True G247
TU515 lncRNA upstream 171118 1783195 ~ 1784512 (-) True G347
TU528 lncRNA upstream 254563 1866640 ~ 1867365 (-) True G358
TU548 lncRNA upstream 277899 1889976 ~ 1893190 (-) True G372
TU560 lncRNA upstream 329874 1941951 ~ 1942933 (-) True G378
TU563 lncRNA upstream 334956 1947033 ~ 1947420 (-) True G380
XM_043237908.1 mRNA downstream 892 1592069 ~ 1604984 (-) False LOC122343438
XM_043237922.1 mRNA downstream 892 1594861 ~ 1604984 (-) True LOC122343438
XM_043237916.1 mRNA downstream 892 1597211 ~ 1604984 (-) False LOC122343438
XM_043235983.1 mRNA downstream 136775 1465437 ~ 1469101 (-) True urp2
XM_043246442.1 mRNA downstream 157362 1442791 ~ 1448514 (-) False rcan1b
XM_043239674.1 mRNA upstream 350237 1962314 ~ 1968862 (-) False n6amt1
XM_043239665.1 mRNA upstream 350237 1962314 ~ 1968862 (-) True n6amt1
XM_043239683.1 mRNA upstream 350237 1962314 ~ 1967111 (-) False n6amt1
XM_043235994.1 mRNA upstream 539574 2151651 ~ 2155943 (-) True LOC122342174
XM_043247680.1 mRNA upstream 612012 2224089 ~ 2235491 (-) True jam2a
XR_006250784.1 other downstream 892 1594758 ~ 1604984 (-) False LOC122343438
XR_006252053.1 other downstream 476239 1129499 ~ 1129637 (-) True LOC122353706
XR_006252043.1 other downstream 978058 627700 ~ 627818 (-) True LOC122353666
unassigned_transcript_1 other downstream 1166748 439054 ~ 439128 (-) True trnag-gcc
TU105 other downstream 1169751 435808 ~ 436125 (-) True G67
TU999 other upstream 1076688 2688765 ~ 2689464 (-) True G654
TU1152 other upstream 2395763 4007840 ~ 4014287 (-) True G782
TU1193 other upstream 2686233 4298310 ~ 4299193 (-) True G820
XR_006252050.1 other upstream 4165494 5777571 ~ 5777657 (-) True LOC122353693
XR_006251180.1 other upstream 4233999 5846076 ~ 5853244 (-) False LOC122346875

Expression Profile