RNA id: XR_006250463.1


Basic Information

Item Value
RNA id XR_006250463.1
length 2507
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id LOC122341420
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 4020097 ~ 4024338 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AactcatctaaaaaaaaaatgtcaatatgtAGCATATtcccaaaaaaagtttttgtttttttttaaaacgtcagGAACCGAAGACAACCCAAATGCCCAGAAACCAGCAGGGGGGCGTCGTGGATCCCCTACGGCGCACTGACAAAGACGGAGCGGCAGACTTCTGCTGACTGTCATTTCTCAGCCTGTGGAGAGGAGCGGTGTCATGTCAACCTAAGAAGAGCAGGCCACCTCATCGGATCATCCCACACTCTTAAAGGTCCTGGCCTCAGCAACCTTCACTCCTTCCCTCTTGTGTGTGTCACTTCACTTCTCGCTGATTAATCTTCCAGTCCTGCGCGCATTACGGCTGACTAACGGATGATGGGTGTCAAAACAAGTCAGCCAACTGTTATCCATCtattttgctcattttgtttGGGAGATCATCGTGGAGTTCGCATGGGATCTCCCGCTCCAAGATTAATGAGGAACCCTGCAGGAACGGAAATGTTTTTGAGCTTCAAGGGGACATGTCAGAGAAAATGGAGATTGGCTGATATTGCTTCTCATGACTGATACTGATACAGAttctttttttgggggttttcattttttcattttaatttaattttcatataatataatacgaaataaaataaaatatttaactgataaataaatatgcccaacttttgcatttttaaaaaaatgttgatcatttaaaatgactataaaatGCAACCTGGGTTTCAAAATAATTCTACAATAATAGTATACGGGTGATGAACGAAATATTattgttaacattattattcTTCAGTCTACTTTTTAGCAGGTAAAAGGCATGCTCCACAGGGTTTAAGTCTGGAGATTGGTCGGTCTAAAACCTTCTGCTTCTTGCgaactcttttgttgttttgactgtgttttgggtcattatcTTGCTGCATGATGAAGGGTCTCCCAATAAGTTTGGTtgcatctttctttaaattggCTTACAAAATGCTTCTGTAGACCTCTGAGTTCATTTTGCTGCAATCAAAGGTTAATGAGCCCGTCCTAGAAGAAGCCACGACATTACCTCCACTGTGTTTCACAGATGAACTTGCACGATTGGGATCACGAGCAGATCCTTTCTTTCCCCAAACCTCAGCTTTTCTGTCACTTTGGTAAAGGTTAATCTTTGTCTCATCGTTCCATAAAACTTGGTCTCATAGTCTTTGAGGCTCATCTCTGTACTTTTTAGCAAATTCCAGCCTGGCCTTTCTATTCTTTTTGCCAGTGAGCGGTTTGCATCTTCTGGTGTAACCTCTTTACTTGTGAAGTTTTCTGCGATCAGTAGACCCCTGCCCTGGAGATTGTTGCTGATAACTTACAGTTGTTTTAAAGTCTTTCCTGACAGCTCTTACAATGCTTCTGTCATCAACCGCAGTTTTTTTCCTTGGTCTACCTGCTCGATGTCTGTTACTTAGTACACCAGCGGCTTCTTTTTTCTTCAAGACATTCCGAATGGTTGAAATGGCTATGGCTAATGTGTGTGCAATGGCTCTGATTCATTCTCTCTCAGCTTCACAGTTGCTTGTTTTTCACTCATAGACAGCTCTCTGGTCTTCATGTCGGTTACACGTCTTAACTACAAATGCAGCTTGAACAGGCAAAACCCAAACGTGAGACTGAGCTTGAACATTCAGTGCTAATTATTGTTTGAATAATCATTGTGATTGGACACACCTGGGCAACGAAGTACACCTGTCAGTCACATGCTCCAATACTTTTGCTCGCATGAAAAATCGGTGTGTTCAAACAAAGCATGCTATCTTCTAAATTGTGTGTCAGATCTTTTTTTGGCCTCACTGTCCCAATACTTTTGGGGGGAgcgagtgtgtatgtgtacacacacacacacacacacacacacacaatacagcACGGCTATGATCGCTTCACCCAACAGTTCTGTCTATCACTGAGCAGCACTCTTGGCAACCACCGTtagcaacataaacaatcaATGATACAGCATAAAACTGTTCTGTGTATTATGCATTTCGGCAAAATTAAAtgcgttatttatttaatgaagtagGAGTGACCTCTGCTGGCCTTATGTTACATATTTGATCTTTAATTTTGAGACCACGCCCTTCCCAGTCTAATAAACGTTTCTCATGCGGAGATGATCCAGCAGTTTTTTCAGCGTGATGaagaatattactgtatttactaGTTTTCTGTTTCGAGTATGATCAATTATCCATCAGTTTACACTGAAATGAGACTCAGAGTTTTTAAACTGAAAGACggaaaacagatgttttcacATGAAGAGATGAGTGagagaaaatattatatatggtgttaaaaaataaattatgcagtggATGATAAGCTATTTTCTGTCAGTggactatttttttgttttagcggaaagactgcatttaacaaatttttgtactattactgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1141 lncRNA upstream 299558 3720264 ~ 3720539 (+) True G771
TU1087 lncRNA upstream 733895 3285949 ~ 3286202 (+) True G719
TU796 lncRNA upstream 1289377 2726300 ~ 2730720 (+) True G546
TU785 lncRNA upstream 1299174 2703522 ~ 2720923 (+) True G538
TU769 lncRNA upstream 1392693 2626045 ~ 2627404 (+) True G527
XR_006251095.1 lncRNA downstream 185071 4209409 ~ 4218600 (+) True LOC122346127
XR_006251103.1 lncRNA downstream 194904 4219242 ~ 4221288 (+) True LOC122346159
TU1185 lncRNA downstream 269715 4294053 ~ 4299198 (+) True G815
TU1187 lncRNA downstream 269715 4294053 ~ 4299198 (+) False G815
TU1188 lncRNA downstream 269715 4294053 ~ 4299198 (+) False G815
XM_043249780.1 mRNA upstream 8727 4007775 ~ 4011370 (+) True LOC122352357
XM_043251222.1 mRNA upstream 202101 3804599 ~ 3817996 (+) True slitrk6
XM_043246568.1 mRNA upstream 899277 2941770 ~ 3120820 (+) True LOC122350229
XM_043246576.1 mRNA upstream 899277 2941770 ~ 3120820 (+) False LOC122350229
XM_043224891.1 mRNA upstream 1237913 2758083 ~ 2782184 (+) True LOC122328837
XM_043236152.1 mRNA downstream 196945 4221283 ~ 4232503 (+) True LOC122342374
XM_043240733.1 mRNA downstream 470856 4495194 ~ 4499239 (+) True spry2
XM_043240593.1 mRNA downstream 524114 4548452 ~ 4554686 (+) True tuba8l2
XM_043240746.1 mRNA downstream 531167 4555505 ~ 4561710 (+) False stk16
XM_043240754.1 mRNA downstream 531269 4555607 ~ 4561710 (+) True stk16
TU1118 other upstream 321004 3636707 ~ 3699093 (+) True G749
TU1095 other upstream 679221 3334658 ~ 3340876 (+) True G727
XR_006252051.1 other upstream 1277885 2742079 ~ 2742212 (+) True LOC122353699
TU717 other upstream 1423795 2594931 ~ 2596302 (+) True G482
TU696 other upstream 1492853 2524525 ~ 2527244 (+) True G474
TU1197 other downstream 332360 4356698 ~ 4357260 (+) True G824
TU1199 other downstream 333669 4358007 ~ 4358296 (+) True G826
XR_006251076.1 other downstream 913845 4938183 ~ 4944841 (+) True prkag3a
XR_006251062.1 other downstream 942848 4967186 ~ 4976846 (+) False gtf3c3
TU1696 other downstream 1855122 5879460 ~ 5881134 (+) True G1168

Expression Profile