RNA id: XR_006251103.1


Basic Information

Item Value
RNA id XR_006251103.1
length 218
lncRNA type sense_over
GC content 0.50
exon number 3
gene id LOC122346159
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 4219242 ~ 4221288 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CAACCTTCCAGCTCGAGCACAATCCCAACGCCAAATACACCTATGGAGCGTTCTGTGTCAAGAAATGCCCACATAACTTTGTGGTGGATCACAGCTCTTGTGTCAGAGCCTGTCCGAGCAACAAGATGGAGGTGGAGGAAAATCACATCAAGATGTGCATCCCATGCACTGACATCTGTCCGAAAGTGTGTGACGGTATAGGTACCGGCAGTCTTCAG

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251095.1 lncRNA upstream 642 4209409 ~ 4218600 (+) True LOC122346127
XR_006250463.1 lncRNA upstream 194904 4020097 ~ 4024338 (+) True LOC122341420
TU1141 lncRNA upstream 498703 3720264 ~ 3720539 (+) True G771
TU1087 lncRNA upstream 933040 3285949 ~ 3286202 (+) True G719
TU796 lncRNA upstream 1488522 2726300 ~ 2730720 (+) True G546
TU1185 lncRNA downstream 72765 4294053 ~ 4299198 (+) True G815
TU1187 lncRNA downstream 72765 4294053 ~ 4299198 (+) False G815
TU1188 lncRNA downstream 72765 4294053 ~ 4299198 (+) False G815
TU1231 lncRNA downstream 280953 4502241 ~ 4502477 (+) True G856
TU1232 lncRNA downstream 282244 4503532 ~ 4503821 (+) True G857
XM_043249780.1 mRNA upstream 207872 4007775 ~ 4011370 (+) True LOC122352357
XM_043251222.1 mRNA upstream 401246 3804599 ~ 3817996 (+) True slitrk6
XM_043246568.1 mRNA upstream 1098422 2941770 ~ 3120820 (+) True LOC122350229
XM_043246576.1 mRNA upstream 1098422 2941770 ~ 3120820 (+) False LOC122350229
XM_043224891.1 mRNA upstream 1437058 2758083 ~ 2782184 (+) True LOC122328837
XM_043240733.1 mRNA downstream 273906 4495194 ~ 4499239 (+) True spry2
XM_043240593.1 mRNA downstream 327164 4548452 ~ 4554686 (+) True tuba8l2
XM_043240746.1 mRNA downstream 334217 4555505 ~ 4561710 (+) False stk16
XM_043240754.1 mRNA downstream 334319 4555607 ~ 4561710 (+) True stk16
XM_043240557.1 mRNA downstream 368743 4590031 ~ 4597077 (+) True atic
TU1118 other upstream 520149 3636707 ~ 3699093 (+) True G749
TU1095 other upstream 878366 3334658 ~ 3340876 (+) True G727
XR_006252051.1 other upstream 1477030 2742079 ~ 2742212 (+) True LOC122353699
TU717 other upstream 1622940 2594931 ~ 2596302 (+) True G482
TU696 other upstream 1691998 2524525 ~ 2527244 (+) True G474
TU1197 other downstream 135410 4356698 ~ 4357260 (+) True G824
TU1199 other downstream 136719 4358007 ~ 4358296 (+) True G826
XR_006251076.1 other downstream 716895 4938183 ~ 4944841 (+) True prkag3a
XR_006251062.1 other downstream 745898 4967186 ~ 4976846 (+) False gtf3c3
TU1696 other downstream 1658172 5879460 ~ 5881134 (+) True G1168