RNA id: XR_006251104.1


Basic Information

Item Value
RNA id XR_006251104.1
length 726
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id LOC122346166
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 4624047 ~ 4627918 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATGTTTTTGCCTCCAgctatttttttcctgtgcaaAACTGCtgtctcatgttttttttttatttacatgctaAGGGATCAACAGAGGATTAGATGTTTAAACAACACGTCAAGGAGAAAGCCATATAATTGCATAACAGAGTGGATCTGTATAGGAACAGGACTTCACTGACAGGACCGCCTGACATTCTCCAAAGaaTTCCGGTTTCTGCATACTAATCTCGCAGAACGTCACTTCACCTCGTCCAGCTCATGTTCGGCTGATGGAGCTTTGACAACGTGCTGGATTCCACATAAACATGATGGTCCACTGATCCAGTTCCTGTTTGCTGGGACACTCTATAGTGAACGGTCAGTGGCGGCGAGACTACCTTATCCTCAGGGAAACTCAGTGACTCAGCGCTGCTGCTCAGGtggatgtgagtgtgtgtttgttgaccGTGTGTGAACGGTAATGGTTGTTCAATCACTCAGCAGCGTCTCTGACGTGTCTTCAGAGTTTGCTTGTGTCTGCGGACTGTTGGTTCATTGATGTGTCTTGTTTTTTGTGTTCCCATGATGTCTGGTATAAATAATGAAGCCTTTCATAGGGTTTTTTATACTAAAGCAGTACCACAGTATTATTCCAGTgcactatttaaatgtatttggtaGCACTATGCATAAGATCagctgctaaataaataaatgtaaaagtaatccAGTACCATGACATTTCAATCTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1228 lncRNA upstream 4318 4619243 ~ 4619729 (+) True G853
TU1249 lncRNA upstream 7108 4616118 ~ 4616939 (+) True G872
TU1246 lncRNA upstream 8645 4614818 ~ 4615402 (+) True G870
TU1244 lncRNA upstream 9917 4613572 ~ 4614130 (+) True G869
TU1222 lncRNA upstream 14173 4608531 ~ 4609874 (+) True G847
TU1364 lncRNA downstream 268586 4896504 ~ 4914422 (+) False LOC122346140
XR_006251100.1 lncRNA downstream 268878 4896796 ~ 4918795 (+) True LOC122346140
XR_006251098.1 lncRNA downstream 268878 4896796 ~ 4914527 (+) False LOC122346140
TU1369 lncRNA downstream 290110 4918028 ~ 4918364 (+) False LOC122346140
TU1377 lncRNA downstream 310301 4938219 ~ 4944834 (+) False prkag3a
XM_043240557.1 mRNA upstream 26970 4590031 ~ 4597077 (+) True atic
XM_043240746.1 mRNA upstream 62337 4555505 ~ 4561710 (+) False stk16
XM_043240754.1 mRNA upstream 62337 4555607 ~ 4561710 (+) True stk16
XM_043240593.1 mRNA upstream 69361 4548452 ~ 4554686 (+) True tuba8l2
XM_043240733.1 mRNA upstream 124808 4495194 ~ 4499239 (+) True spry2
XM_043240618.1 mRNA downstream 17016 4644934 ~ 4649367 (+) True LOC122346000
XM_043240644.1 mRNA downstream 24714 4652632 ~ 4657892 (+) True LOC122346016
XM_043240631.1 mRNA downstream 31952 4659870 ~ 4664510 (+) True LOC122346006
XM_043240532.1 mRNA downstream 294609 4922527 ~ 4931978 (+) True abcb6a
XM_043240606.1 mRNA downstream 304537 4932455 ~ 4937679 (+) True cnppd1
TU1199 other upstream 265751 4358007 ~ 4358296 (+) True G826
TU1197 other upstream 266787 4356698 ~ 4357260 (+) True G824
TU1118 other upstream 924954 3636707 ~ 3699093 (+) True G749
TU1095 other upstream 1283171 3334658 ~ 3340876 (+) True G727
XR_006252051.1 other upstream 1881835 2742079 ~ 2742212 (+) True LOC122353699
XR_006251076.1 other downstream 310265 4938183 ~ 4944841 (+) True prkag3a
XR_006251062.1 other downstream 339268 4967186 ~ 4976846 (+) False gtf3c3
TU1696 other downstream 1251542 5879460 ~ 5881134 (+) True G1168
TU1714 other downstream 1429486 6057404 ~ 6087655 (+) True G1183
TU1931 other downstream 1657940 6285858 ~ 6287198 (+) True G1318

Expression Profile