RNA id: XR_006251226.1


Basic Information

Item Value
RNA id XR_006251226.1
length 2681
lncRNA type inter_gene
GC content 0.35
exon number 3
gene id LOC122347488
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 1256189 ~ 1263203 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGACGTTTATATGACAAACACCATCATCACAAAGTAGAAGACCATCAATGTACAACAGCAATGCAATAACATCATTACATGGAACatgttttgcatatttgtttgtttagggCCATTTTTGACTATAGTGGTGCCCTAGGCTGTTTGCACTCTGGAGCCAaacaataaattgaatttacattaaattcaatatctacatttaattaatgcattctCAGAATatgaacccatgaccttggcattgTTAGTGCCATTCTGTTGAAAagcaacataaaacatacagtgtaTTAAACcactttaattttattagttAAACAGGTTTAGGCTAAGCCTGGTGCTTAATAAACGCCCTTTAATAATGGAAAAGCATTTCAGCATATGCTTTTTAATCTCAATGCTATTCTGTAAAATAGCAACAAGTTATGTGTGTTACGAAaagtaatacattaaaattaaatgttttgaaaaactcCCTATAATGAAAGCTGATTATAGTgttttttacaatgttaaaatacatcttattttcatattataattatattttatattgttttgtattataatcTATTATACTAATGTCTGAATTAATTATAACCATATTTGAATCACACTTgccatttatttagatttttattatataatatctataaaataactttcatttaagttttttaatgagatttttttttttttttagtttttttatctgtagttttttgtgtgtgcttgtttatttcttttagtttacAGTATAGCTAACACAGGGTCCAATGCTGCTTTTTCTAAAGGTCTTTTACGTTCAGTGGAAGAAAGGTATACAGGTATAGGATATGTTGGCTTTTTCACAGTGGCTTTGACTTTGGCTCAttgtttactgtatatttctcctttttttcgTCTGCTTTTTAGAGTTTACTGTGCATTTTATTCAGCAGAATGAGTGGCAGCTATTGATGGGTCCTTCTTAAACGATTCGTTCGTTTTGAGCGATTCTTTAATGTGACTCTGGAAGAACTAGTCATCTCGGAGAGTAATTCGTTCATTTGCGCATGCGCAATATACTATAGGTTTTGTGCTGGATTTAGTTCGAAAAACTCTGTAGATTAACTAATCAATTCTCTTTACAGATCATACTGCATTGGTTAAAGTTTATGGGGCTGTCACGTGATGAACGAACGACTCAGACACAAAGACTCGTCAGATAAGAAGCTAATCATAGACTCAGCTGCTTTCTCCATCCTGTTGCCTCCTCGACTCTAACCATAGAAAGAGgACAACTTTGGCAATGTGTGACGGAGTTTATGGTTCATCAGTAGGTCAACAGGAGATAACCCACAATGATAACTCAAAAATGTCAGATATTAATTTGCAAAACTTTCTGCTTTTCCACTTGTCTAGGGGTTTCACTATTTCACTATTACTATACTGAGGATTATTATCATTTTGCACAATGAACACAAGTTGCCTTTCATGTATACGATGAAGCACATATCGACGCATTGATGCTGcaaagataattaaaaatgtcttcaacaACAAGCTATTATGCACACTCAGTTATGCCCTCATTGGAATCTAATCTAAGGTTTAATCCATCCTTGGTGAAGAAGAAGAATCACTGTCAGCAATTCGTCATTTCCTCCCAATACGTCAAACCCAGGTTCcaataaacgaataaataactgagcagcacaactgtttaaaTCAGCATATCGATTTCTGATTTCTGGGCTTCAGACAcactttttctgtttaaatacagaTCTATTTAGCCAAGCGTTCACGTGATGTTTCTCATAAGCTTGTACTGCACTTATATCTgatcacattatttttttttttgcttggttgGAAAAGCAAgtctctgtttgtttctgtcatgGGATCGACATCCATGGTAACTAAGAATTGCACAAGTTTACGTCTTTCACCATACTGTTGCTTCACACAGAGCTGTTGAGTCGTTCTATACAGTATTGTGGCATCTTTTGAATATTCAGCGACCTTTACAATATGGTGGACGGCATCTGCATATACATTTCTATGGGTGCTGATGCCTTTATTCCACTTTGAACCTTCATCATATACATCATACTCTTGACTTTTTACAATTCATTACTGCCACCTCGTGGACTAAACGTCCAACTCATTAAATCCTACAGtccctgttgaaaaaacagcacacgctggttaggtatgttctgtagctgggatgctggtttaagttTTTTGACCAAAATGAACCAGcgacatacctaaccagcatgtgatgtttttttcttttttatgtatttgttccCTCTCCGTTCAGCATTAAACCTCCCTCGGATCAATGAAATGTTTTCCTTCTGTGCTGGATGTTGGCGTTCATGATCAATAAATGGTTTGCATTTGCCCAaatttatttagtcaaaaagCAGACGGTGAACGTTAATCTTGTGCTAGCTCCTGTTTAGTTGGGTTCATTTACACGTGGGTTAATTCATCTCTACCGGATATCTGGTTTATGCTAATACAGTGGTATAATGATGAGAGGAAATGAAGAGATCAAAACAGTTGCCCATTGCTGTTGACTTTGAGTCTGAAGTCAGtcgtttaaaaatgtttggagTGATTTTGtggttataataaaaatgtagattcACCTTTTGGAGATGAAGTCAGGAATGttattgaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU339 lncRNA downstream 44046 1076188 ~ 1212143 (-) False mbnl2
TU331 lncRNA downstream 44046 1166508 ~ 1212143 (-) False mbnl2
TU328 lncRNA downstream 282220 973746 ~ 973969 (-) True G231
TU177 lncRNA downstream 365602 890244 ~ 890587 (-) True G125
TU158 lncRNA downstream 507825 741070 ~ 748364 (-) False LOC122342053
TU355 lncRNA upstream 19635 1282838 ~ 1284809 (-) True G244
TU361 lncRNA upstream 81095 1344298 ~ 1346789 (-) True G247
TU386 lncRNA upstream 177885 1441088 ~ 1441512 (-) True G260
TU436 lncRNA upstream 303835 1567038 ~ 1567532 (-) True G297
TU451 lncRNA upstream 317540 1580743 ~ 1582087 (-) True G303
XM_043242651.1 mRNA downstream 24542 1166687 ~ 1231647 (-) False mbnl2
XM_043242734.1 mRNA downstream 24542 1166687 ~ 1231647 (-) False mbnl2
XM_043242706.1 mRNA downstream 24543 1166687 ~ 1231646 (-) False mbnl2
XM_043242750.1 mRNA downstream 24543 1166687 ~ 1231646 (-) False mbnl2
XM_043242697.1 mRNA downstream 24543 1166687 ~ 1231646 (-) True mbnl2
XM_043242641.1 mRNA upstream 1568 1264771 ~ 1269925 (-) True slc5a3a
XM_043246720.1 mRNA upstream 14297 1277500 ~ 1315538 (-) True ptgfrnb
XM_043248832.1 mRNA upstream 55587 1318790 ~ 1324793 (-) True si:ch211-132g1.1
XM_043248853.1 mRNA upstream 68480 1331683 ~ 1333824 (-) False si:ch211-132g1.6
XM_043248843.1 mRNA upstream 68480 1331683 ~ 1333823 (-) True si:ch211-132g1.6
XR_006252053.1 other downstream 126552 1129499 ~ 1129637 (-) True LOC122353706
XR_006252043.1 other downstream 628371 627700 ~ 627818 (-) True LOC122353666
unassigned_transcript_1 other downstream 817061 439054 ~ 439128 (-) True trnag-gcc
TU105 other downstream 820064 435808 ~ 436125 (-) True G67
TU47 other downstream 1069104 186420 ~ 187085 (-) True G20
XR_006250784.1 other upstream 331555 1594758 ~ 1604984 (-) False LOC122343438
TU999 other upstream 1425562 2688765 ~ 2689464 (-) True G654
TU1152 other upstream 2744637 4007840 ~ 4014287 (-) True G782
TU1193 other upstream 3035107 4298310 ~ 4299193 (-) True G820
XR_006252050.1 other upstream 4514368 5777571 ~ 5777657 (-) True LOC122353693

Expression Profile