RNA id: XR_006251817.1


Basic Information

Item Value
RNA id XR_006251817.1
length 1942
lncRNA type inter_gene
GC content 0.45
exon number 3
gene id LOC122351936
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 1991877 ~ 1997037 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACCTTGAATGTGCTTGTGAACCACCAACCAGGATCCACGTAAAACCAGGGGCAGTTTCAGGACTTTTTCTAAAGTAAATGTGCTCACTTCCAAAGAAAAGAGACATGTGGTCAGGTCACCCATATTTTTAGGATTCTGGCATCACCTTAGTTTGATTTTACTCACTTTTTATGTTCCAAAAACCGATGTGTCAAAGCCTGCTCTGTTGAGCCTGCGGCTTTATATGAGGCTGATTCAAACCAGAAAATGCTTTGGTGCATCATAATAACGACTTAAAAAGTTATAATTGTGACAGAAAATTCTAAATTGACATATATCTTAATTAGgacaaaaagtcaaatttatgagattttaaaaaagtcatacTAAATTATAATTCTGAGATTGACCCTTCAGAGCAGTTCTTTCGGATGGAACGCAGGGTGTCACGCCAAAAAACGTCCTTCTGCAAAGGATCATGGATCCCTTTTGAAGAGCTCTTTCATCTTACACCAGTCCCAAACAATAAGACAAATTTGAGAGCATTCCCAACCTTGTGGTCCAATTTTAGGCCTTTTGTTAGAGCTGTCCGCAAGAACGCTGTACGAATGAGTCCACCTAGCAGTAATGCTGACTCACTGGGGCGGTGTTGCCTTCCTGGCTGTCTATGATGTACTTCCTCAGAGCAAAGCGTTCCTGCTTCCCAAGGTTGCCTTTCCTGGTTGACCTTCGGCTCAGCTTCCACGATGGGGTTCGTCACACCCTTCCAGGAACCAAACGGCTACCAAGGGTCTGTGGAAGATATAACTCTTCTGAAGGGATATGATGACGTCTGCTCGACGACCACGCCTCGAAACCCTGACAGCTAGCGTTAGCATTGGCTAAAGCACCGAGCTCTGGCGGTCCTCCAATGAATGATGTTGAAGGTGGACAGAAGGTGGCCTCCTCCTACGGCTGGGTCTGGATGAGAGGAGCAGCTGTGACCGGCCTcctcactcttaaccctgtgaAGCCCGGCATatgaaacatataaaaatatggaGCTGTTTATGGAAGATTTGGACAATGCATTACTATCGATTTTGACAGTCCACTTAAGACATTCTACAAAGCAAGTAACTAAATGtcttacttactgttagtagaatatctatcaaaataaagtttgcGTATGTGTTTCTATCAGGCTTTCAGGgtcatgaagaaaaaaacagctcacTTTTATCCAGAGGCAacaattctgatgtttttaatgtaaaaacgaAAGGATGAAACATATAAAGCAGTGCTGACGGAGAGCTGAGGAAATaaaggctcctcagaagatgtgagatgttttggagaTCATTGCTCCGCTGAGGAACAGCGAAAGTAAAGATGTGATGATCAGACTCTTCTAGAAAGTGACTGATGGAGAATCGAGTGAAGCTGTTCATCTGGAGATATGACCGCAGTTATTCTGACCTTTACTTGATCAGAATCAGTCCAGATGCGGCAGAAAACTACTCTACGGCTTTAACTAGTCCACAGAAGGGACACAGAAACAGCAAAACTGATCAGATATGATGCAGCAGGCTTTATAAGGTTAAAGCGTGTCCCTCTCCTTCTCGTGCACAGGATGGCTTTATTGCAGGACACCTGGGAATCTCGTTGGATCGCGATCACTCGTTTCACTCGTTTCACTTTTATTGTATCCTGCTTTTTGAATGGGATATATTCTGACTGGACGCTTTCAGGCCCACCTGCCATCTCCCGCTCATTGGTCAGAGGACAGGGAGGTGAGGAACAGGGATATTCTGGAGTCGGAGCCCGGGGCTTTTCCTTCCTGTGGTTTAATGGCTCACTGACGGTGACCGGCTTTCATCTGAGCGGGTGAATATCTCACACAGATCCGCCTGAGATGATGCACAACCCCCGGGGAAGTCCAGGGAAATCAGGCCGGATGACAGGATATGCTCAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU563 lncRNA downstream 44457 1947033 ~ 1947420 (-) True G380
TU560 lncRNA downstream 48944 1941951 ~ 1942933 (-) True G378
TU548 lncRNA downstream 98687 1889976 ~ 1893190 (-) True G372
TU528 lncRNA downstream 124512 1866640 ~ 1867365 (-) True G358
TU515 lncRNA downstream 207365 1783195 ~ 1784512 (-) True G347
XR_006251658.1 lncRNA upstream 16042 2013079 ~ 2017454 (-) True LOC122350950
TU593 lncRNA upstream 69500 2066537 ~ 2066858 (-) True G402
TU879 lncRNA upstream 172918 2169955 ~ 2173665 (-) True G584
TU812 lncRNA upstream 191464 2188501 ~ 2219729 (-) True G554
TU854 lncRNA upstream 194796 2191833 ~ 2203918 (-) True G567
XM_043239674.1 mRNA downstream 23015 1962314 ~ 1968862 (-) False n6amt1
XM_043239665.1 mRNA downstream 23015 1962314 ~ 1968862 (-) True n6amt1
XM_043239683.1 mRNA downstream 24766 1962314 ~ 1967111 (-) False n6amt1
XM_043262113.1 mRNA downstream 379795 1605876 ~ 1612082 (-) False wu:fa56d06
XM_043262747.1 mRNA downstream 379795 1605876 ~ 1612082 (-) False wu:fa56d06
XM_043235994.1 mRNA upstream 154614 2151651 ~ 2155943 (-) True LOC122342174
XM_043247680.1 mRNA upstream 227052 2224089 ~ 2235491 (-) True jam2a
XM_043247686.1 mRNA upstream 227052 2224089 ~ 2235487 (-) False jam2a
XM_043245035.1 mRNA upstream 242101 2239138 ~ 2244571 (-) True mrpl39
XM_043247959.1 mRNA upstream 263680 2260717 ~ 2267466 (-) False LOC122351091
XR_006250784.1 other downstream 386893 1594758 ~ 1604984 (-) False LOC122343438
XR_006252053.1 other downstream 862240 1129499 ~ 1129637 (-) True LOC122353706
XR_006252043.1 other downstream 1364059 627700 ~ 627818 (-) True LOC122353666
unassigned_transcript_1 other downstream 1552749 439054 ~ 439128 (-) True trnag-gcc
TU105 other downstream 1555752 435808 ~ 436125 (-) True G67
TU999 other upstream 691728 2688765 ~ 2689464 (-) True G654
TU1152 other upstream 2010803 4007840 ~ 4014287 (-) True G782
TU1193 other upstream 2301273 4298310 ~ 4299193 (-) True G820
XR_006252050.1 other upstream 3780534 5777571 ~ 5777657 (-) True LOC122353693
XR_006251180.1 other upstream 3849039 5846076 ~ 5853244 (-) False LOC122346875

Expression Profile