RNA id: XR_006252051.1


Basic Information

Item Value
RNA id XR_006252051.1
length 134
RNA type snoRNA
GC content 0.47
exon number 1
gene id LOC122353699
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 2742079 ~ 2742212 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTGCCCCTTGAAGGCGTTGCAGTGTGACTGATTCTGTCATTTCTGTGTCATAAGGTGGCACAGAGTAGAAGGACTGTGTCTACACCTAGTACCCTTAACAATGGATGCTCAGTGTCATTTACAGCCCTACAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU796 lncRNA upstream 11359 2726300 ~ 2730720 (+) True G546
TU785 lncRNA upstream 21156 2703522 ~ 2720923 (+) True G538
TU769 lncRNA upstream 114675 2626045 ~ 2627404 (+) True G527
TU722 lncRNA upstream 136002 2603191 ~ 2606077 (+) True G486
TU760 lncRNA upstream 153071 2588687 ~ 2589008 (+) True G518
TU1087 lncRNA downstream 543737 3285949 ~ 3286202 (+) True G719
TU1141 lncRNA downstream 978052 3720264 ~ 3720539 (+) True G771
XR_006250463.1 lncRNA downstream 1277885 4020097 ~ 4024338 (+) True LOC122341420
XR_006251095.1 lncRNA downstream 1467197 4209409 ~ 4218600 (+) True LOC122346127
XR_006251103.1 lncRNA downstream 1477030 4219242 ~ 4221288 (+) True LOC122346159
XM_043240364.1 mRNA upstream 41855 2691742 ~ 2700224 (+) True tmem39a
XM_043240370.1 mRNA upstream 41855 2691746 ~ 2700224 (+) False tmem39a
XM_043249376.1 mRNA upstream 51314 2678298 ~ 2690765 (+) True ildr1a
XM_043248288.1 mRNA upstream 66050 2656133 ~ 2676029 (+) True LOC122351317
XM_043248297.1 mRNA upstream 66050 2656133 ~ 2676029 (+) False LOC122351317
XM_043224891.1 mRNA downstream 15871 2758083 ~ 2782184 (+) True LOC122328837
XM_043246568.1 mRNA downstream 199558 2941770 ~ 3120820 (+) True LOC122350229
XM_043246576.1 mRNA downstream 199558 2941770 ~ 3120820 (+) False LOC122350229
XM_043251222.1 mRNA downstream 1062387 3804599 ~ 3817996 (+) True slitrk6
XM_043249780.1 mRNA downstream 1265563 4007775 ~ 4011370 (+) True LOC122352357
TU717 other upstream 145777 2594931 ~ 2596302 (+) True G482
TU696 other upstream 214835 2524525 ~ 2527244 (+) True G474
TU718 other upstream 228220 2511721 ~ 2513859 (+) False pcid2
TU731 other upstream 256091 2483673 ~ 2485988 (+) False grtp1a
TU616 other upstream 549615 2185859 ~ 2192464 (+) True cyyr1
TU1095 other downstream 592446 3334658 ~ 3340876 (+) True G727
TU1118 other downstream 894495 3636707 ~ 3699093 (+) True G749
TU1197 other downstream 1614486 4356698 ~ 4357260 (+) True G824
TU1199 other downstream 1615795 4358007 ~ 4358296 (+) True G826
XR_006251076.1 other downstream 2195971 4938183 ~ 4944841 (+) True prkag3a