RNA id: XM_043252076.1


Basic Information

Item Value
RNA id XM_043252076.1
length 2843
RNA type mRNA
GC content 0.52
exon number 17
gene id raf1b
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1054577 ~ 1070499 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGCTTCGAACCAGTCGACCGTCCacgaaaaaaacaaactagCGTTTTTAGCTTAGTTAGTCGCGCGGCTAGCGGTGACGTCACGGTGACGTCACGCTCTCCCTCGTAGCGATAATCATGGCGGATCAACAATTCAACAACTTTCTCTGATCACTGAAGTCTGCCGCTGCCCGCCGTGATGGAGCACATTCAAGGGGCCTGGAAGAACATCAGTCATGGGTTTGGGTGCAAAGACTCAGTGTTTGAAGATTCCTGCATGTCTCCCACCATCCTCAAGAACTTCCCGTACCGGAGGTTGTCCGATGACGGGCGAATCCCAGACTCGAAAACGAGCAGCACAATCCGTGTCTACCTGCCCAACAAACAGCGGACTGTGGTGAATGTGCGACCGGGTATGACGCTGCACAGCTGCCTCATCAAAGCCCTGAAAGTCCGTGGCCTTCAGCCTGAATGCTGCGCGGTCTTCAAGCTTCATCGAGAACATTCGTTTAAAAAGCTGCGTATGGATTGGAGCACTGATTCTACCTCGCTGGTCGGAGAGGAGTTGCTGGTTGAAGTCTTGGATCACGTACCCCTGACTACGCACAACTTCGTACGGAAAACCTTTTTGAAGCTGGCCTTTTGTGACATCTGTCAGAAGTTTCTCCTGCACGGCTTCAGATGTCAGACGTGCGGCTACAAATTTCACGAGCACTGCAGCACCAAAGTGCCCACGATGTGCGTGGACTGGAGCAACATCCGGCAGCTTCTGCTGTTCCCCACTCCCGGAGAGAACGGGACCCCGGCGCTCCCTCCCCTCTCGTCCCGTCGCATGCAGAACTCTAAATTCTCCTTCAGCCCCTATCACAGATACTCCACGCCGAACGCTTTAAACTACATCACCCCCATGCCGTCCTCCGGCGTCTCTCTCAGTCATAAAGTGCTGTCCACCTCCACCCCAAACGTCCACATGGTGAGCACCACCCAGCCGGTCGACGAGGCTGCTTATCAGGAAGCTTTAGGGCGAGATGAATCAGGAAGCCCGACGGAGTGGTCCAAAACCCCGGCTCCGGCACACAGGGAGAAAGCGCCTGCGACGAACACTCAGGAAAAACGCATCCGTCCCAGAGAGAAGAGAGATTCCAGCTATTACTGGGAGATCGAGGCCACTGAGGTGGTTCTGCTCTCCAGGATCGGCTCAGGGTCTTTCGGCACAGTTTACAAAGGGAAGTGGCATGGTGATGTTGCTGTGAAGATTTTAAAGGTCACAAATCCCACACCAGAGCAGTTACAGGCCTTTCGCAATGAAGTAGCTGTTCTCAGGAAGACCAGGCACgtcaatattgttttgtttatgggATACATGACCAAGGCAAACTTGGCCATTGTGACGCAGTGGTGTGAAGGAAGCAGTCTCTACAAACATCTGCACGTGCAGGAGACCAACTTCCAGATGTTCCAGCTGATGGACATCGCCAGACAGACGGCGCAGGGCATGGATTACCTGCATGCAAAGAATATCATCCATCGAGACATGAAGTCAAACAATATCTTCCTACATGAAGGGCTGACGGTGAAGATCGGTGATTTTGGTCTGGCCACGGTCAAGGCGCGGTGGAGCGGCCCGCATCGAGTGGAGCAGCCGTCTGGATCCATTCTGTGGATGGCTCCCGAGGTCATCCGGATGCAGGACAACAATCCTTACAGTTTTCAGTCGGATGTGTACTCGTACGGTATCGTCCTGTATGAGCTGATGACGGGAGAACTGCCTTATTCTATGACTGGAAACAGAGATCAGATCATCTTCATGGTGGGGAGAGGCTATCTGACCCCTGACCTCAGCAAACTCTACAAGAGCTGTCCCAAAGCCATGAAGAGGCTCGTCGCCGACTGCATCCAGAAGTCCAAAGACGACCGGCCGCTGTTTCCCCAGATCCTGTCCTCGATCGAGCTGCTCCAGCACTCGCTCCCTAAAATAAACCGCAGCGCGTCGGAGCCGTCGCTCCACAGAGCCTCGCACACCGAGGACATCAACGTCTGCACGCTGGCGCTCTCCTCCGCCTTCAAGTGACGCCGTGTTCCTGCGCTCCGTCTAGTGTACTCCGTGTTAGGTCTTTGGTTCACCCGCTCGAGCTGGACCTCTCTTCAGTGCCGAGGGAACGCTAACAGCACTTTCTTCCTCTTTGATCTGTACCGAGCGGGACCGCTCCGAGCTCCGCCGGCTTTCGTCACCCGTACAATCACGTGCCTGGAAGCCGAGGCCCCGGCTGTATACTCCCTAAGTGCCAGTGCCGCTCGTGGCTTTATCGAAACGCCTCCTAGCACAAGGTGTAGGGAGCACTTTACCATCTTGTGTCTTGCTGTCTCTTTGACTGTGTGTATGTTACAGAAATCCAAGAAGGAAGAGTGGGTATTAACTTTATCACGAGACTTACTAGGGATCcgttttttttggcttttagtGGAAGATTAACTTGTAAACTTGACAGATTGTTTattcattgtattttaataaaattaagttaaatgcACCACACAAGCTCGGTTTTTAAGATGAGAAGATTATGGCTTCTTGTCAAGCGCAGACGGCGCTTCGAGGTTAGCGGGACGGAACCGATTTCTACGGACTcgacggatgctctgcagccaatgggtgccgtcagaacgagatgaaaacatcacaataatccacagcactccggtccatcggtgaacatctggagaagaaaaACGCTGAGACAAACCAAGACGTCTTTcacttcaaactgttgcttacaaaatatccataataaaatgcatagtCCGTAATACTGCTAttcttttaagaaaaatctgatgttggtctgaataaatgctgaaattaa

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005057 obsolete signal transducer activity, downstream of receptor molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K04366 RAF1; RAF proto-oncogene serine/threonine-protein kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115920 lncRNA downstream 2033 1050078 ~ 1052544 (-) True G78331
TU115912 lncRNA downstream 4641 1049406 ~ 1049936 (-) True G78327
TU115905 lncRNA downstream 30767 1021476 ~ 1023810 (-) True G78324
TU115869 lncRNA downstream 79877 972962 ~ 974700 (-) False LOC122353728
TU115867 lncRNA downstream 147003 905807 ~ 907574 (-) True G78298
TU115933 lncRNA upstream 5490 1072546 ~ 1073551 (-) False G78338
TU115930 lncRNA upstream 5638 1072694 ~ 1074456 (-) True G78338
TU115932 lncRNA upstream 5638 1072694 ~ 1073551 (-) False G78338
TU115934 lncRNA upstream 5638 1072694 ~ 1073142 (-) False G78338
TU115936 lncRNA upstream 8729 1075785 ~ 1117463 (-) True G78339
XM_043252079.1 mRNA downstream 8621 1044079 ~ 1045956 (-) True mkrn2os.1
XM_043251272.1 mRNA downstream 11158 1040367 ~ 1043419 (-) True mkrn2os.2
XM_043251610.1 mRNA downstream 64315 985343 ~ 990262 (-) True LOC122353725
XM_043251611.1 mRNA downstream 74461 977597 ~ 980116 (-) True LOC122353727
XM_043251612.1 mRNA downstream 79790 972954 ~ 974787 (-) True LOC122353728
XM_043252607.1 mRNA upstream 26216 1093272 ~ 1097710 (-) True rab43
XM_043251522.1 mRNA upstream 138063 1205119 ~ 1206837 (-) True pdrg1
XM_043251322.1 mRNA upstream 141144 1208200 ~ 1211684 (-) True fam217bb
XM_043251323.1 mRNA upstream 141144 1208200 ~ 1211567 (-) False fam217bb
XM_043251560.1 mRNA upstream 150163 1217219 ~ 1260090 (-) True phactr3b
TU115720 other downstream 278612 699943 ~ 775965 (-) False G78195
TU115722 other downstream 278612 699943 ~ 775965 (-) False G78195
TU115726 other downstream 278612 699943 ~ 775965 (-) False G78195
TU115685 other downstream 598579 453134 ~ 455998 (-) True G78170
TU115643 other downstream 605676 443885 ~ 448901 (-) False G78144
unassigned_transcript_1475 other upstream 39289 1106345 ~ 1106416 (-) True trnac-gca_5
unassigned_transcript_1476 other upstream 39723 1106779 ~ 1106850 (-) True trnac-gca_6
unassigned_transcript_1477 other upstream 39933 1106989 ~ 1107060 (-) True trnac-gca_7
unassigned_transcript_1478 other upstream 40149 1107205 ~ 1107276 (-) True trnac-gca_8
unassigned_transcript_1479 other upstream 40367 1107423 ~ 1107494 (-) True trnac-gca_9

Expression Profile