RNA id: XM_043252079.1


Basic Information

Item Value
RNA id XM_043252079.1
length 902
RNA type mRNA
GC content 0.55
exon number 4
gene id mkrn2os.1
representative True

Chromosome Information

Item Value
chromosome id NC_056709.1
NCBI id CM032078.1
chromosome length 24513629
location 1044079 ~ 1045956 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCGCCCCCTGCCGGAGCGCGTCTGTGCGCGATGACGTCACCGGGACCAGCGTCGGGGTCAGAGCGCGACAGGTAACGATGGAGAAAACCCTGATCAAGTACACGCACTGCGGAAGAAACATTTACGTGTTTTCGTGTTCAGAGCGCCGGTGTCCGGCGTGTCTCCAGAGTCTCAGGTTTGGACTTCCGGACGCACCTGTCGCGCTCACCTGTCCCTTCAGGAACGGGCACGCTGTGCCGTGCGCGCTCCTGATCGGGTCCGTCCACGGGCCCACGCATCTCGGAGAATGGCACGACACTGAGATTCACGTAGGGCTGTCAGATTCTGAAGGTCTGGTCTATAACTACACGCTGTCGGGCGTCCGGAGAGACGAGAGCGGCTGGGAGCGCTGCGTCTGCATACAGCTCTGCCCGGCGTGGAGACAGCAGCTCAGGGCATCATGGGACAGAGAGCTGGAGCGCTTCTCCGCTCTGCCTCTGTGGGCTTCGGAGCGGTTTGCTGAGGAGAGGGAGTTCGGCTCGTGCTGCTACGGTTTCGCTCTGACCTTCATAAACCACATGCTCTCGCTGGATGGGAGAGAGGGTCTGAGTCGAGACCAGTTCACGGGGTCTCACGTTTTACCCAGGATGAAGGCGGCCTCGCTCTACATCAGCGTCTATCACGCGGTACTTCAGCATGGATTCTGCATCGCTGGCGTTTCTTCATAAAACACTATCACCGTGTCCAATAAGTTCAGAAACTCTGCATTTGTTCAGAAGAAAGATAGGCGTGTATTGTGATGAAAGCGGATGAATATGTATTGAATAATCCGCTATTTTGGAGTTTTTCAGTTAAAACGGAGAGATAGCAGCGTCGTTCTGTTTGATGTGTCACTACATATTAATAAACCCTTATGATTTGCA

Function

GO:

id name namespace
GO:0010942 positive regulation of cell death biological_process
GO:0043065 positive regulation of apoptotic process biological_process
GO:0043068 positive regulation of programmed cell death biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU115905 lncRNA downstream 20269 1021476 ~ 1023810 (-) True G78324
TU115869 lncRNA downstream 69379 972962 ~ 974700 (-) False LOC122353728
TU115867 lncRNA downstream 136505 905807 ~ 907574 (-) True G78298
TU115715 lncRNA downstream 249943 768141 ~ 794136 (-) False G78195
TU115912 lncRNA upstream 3450 1049406 ~ 1049936 (-) True G78327
TU115920 lncRNA upstream 4122 1050078 ~ 1052544 (-) True G78331
TU115933 lncRNA upstream 26590 1072546 ~ 1073551 (-) False G78338
TU115930 lncRNA upstream 26738 1072694 ~ 1074456 (-) True G78338
TU115932 lncRNA upstream 26738 1072694 ~ 1073551 (-) False G78338
XM_043251272.1 mRNA downstream 660 1040367 ~ 1043419 (-) True mkrn2os.2
XM_043251610.1 mRNA downstream 53817 985343 ~ 990262 (-) True LOC122353725
XM_043251611.1 mRNA downstream 63963 977597 ~ 980116 (-) True LOC122353727
XM_043251612.1 mRNA downstream 69292 972954 ~ 974787 (-) True LOC122353728
XM_043251607.1 mRNA downstream 104976 933852 ~ 939103 (-) False tamm41
XM_043252077.1 mRNA upstream 8621 1054577 ~ 1070499 (-) False raf1b
XM_043252076.1 mRNA upstream 8621 1054577 ~ 1067056 (-) True raf1b
XM_043252607.1 mRNA upstream 47316 1093272 ~ 1097710 (-) True rab43
XM_043251522.1 mRNA upstream 159163 1205119 ~ 1206837 (-) True pdrg1
XM_043251322.1 mRNA upstream 162244 1208200 ~ 1211684 (-) True fam217bb
TU115720 other downstream 268114 699943 ~ 775965 (-) False G78195
TU115722 other downstream 268114 699943 ~ 775965 (-) False G78195
TU115726 other downstream 268114 699943 ~ 775965 (-) False G78195
TU115685 other downstream 588081 453134 ~ 455998 (-) True G78170
TU115643 other downstream 595178 443885 ~ 448901 (-) False G78144
unassigned_transcript_1475 other upstream 60389 1106345 ~ 1106416 (-) True trnac-gca_5
unassigned_transcript_1476 other upstream 60823 1106779 ~ 1106850 (-) True trnac-gca_6
unassigned_transcript_1477 other upstream 61033 1106989 ~ 1107060 (-) True trnac-gca_7
unassigned_transcript_1478 other upstream 61249 1107205 ~ 1107276 (-) True trnac-gca_8
unassigned_transcript_1479 other upstream 61467 1107423 ~ 1107494 (-) True trnac-gca_9

Expression Profile